miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26754 3' -61.2 NC_005808.1 + 31080 0.66 0.325457
Target:  5'- gGGCCU-GGUgccgcugcucaccUCGGuGCAGGCCGgCGAg -3'
miRNA:   3'- -UUGGGuCCAa------------AGCC-CGUCCGGCgGCU- -5'
26754 3' -61.2 NC_005808.1 + 9928 0.66 0.32076
Target:  5'- uGCUCGGGcuucacgUCGGGCAGcuucgcGgCGCCGAa -3'
miRNA:   3'- uUGGGUCCaa-----AGCCCGUC------CgGCGGCU- -5'
26754 3' -61.2 NC_005808.1 + 5820 0.66 0.32076
Target:  5'- cGCCCugguuggucaGGGUUUCGGGCuGGGUauuagggacuuCGCUGGu -3'
miRNA:   3'- uUGGG----------UCCAAAGCCCG-UCCG-----------GCGGCU- -5'
26754 3' -61.2 NC_005808.1 + 3785 0.66 0.298041
Target:  5'- cGACCCAcacGGUacggUCGGGCagcaugaccAGGCgGUCGGg -3'
miRNA:   3'- -UUGGGU---CCAa---AGCCCG---------UCCGgCGGCU- -5'
26754 3' -61.2 NC_005808.1 + 2510 0.67 0.2836
Target:  5'- cAACCCG---UUCGGGCuGGGCgUGCCGGu -3'
miRNA:   3'- -UUGGGUccaAAGCCCG-UCCG-GCGGCU- -5'
26754 3' -61.2 NC_005808.1 + 4538 0.67 0.27659
Target:  5'- aGACCacgaAGGUcUUGGGCuugAGGCCgaagucGCCGAg -3'
miRNA:   3'- -UUGGg---UCCAaAGCCCG---UCCGG------CGGCU- -5'
26754 3' -61.2 NC_005808.1 + 18065 0.67 0.262985
Target:  5'- cGGCgCGGGgugCGuGCuGGGCCGCCGAa -3'
miRNA:   3'- -UUGgGUCCaaaGCcCG-UCCGGCGGCU- -5'
26754 3' -61.2 NC_005808.1 + 5536 0.68 0.243604
Target:  5'- cGCCCAGGUUcCGccCAGGUCGCCc- -3'
miRNA:   3'- uUGGGUCCAAaGCccGUCCGGCGGcu -5'
26754 3' -61.2 NC_005808.1 + 23715 0.68 0.237413
Target:  5'- cGCCCAGGUcgCGGGCcAGuGCC-UCGGu -3'
miRNA:   3'- uUGGGUCCAaaGCCCG-UC-CGGcGGCU- -5'
26754 3' -61.2 NC_005808.1 + 8691 0.68 0.237413
Target:  5'- cGCCCAGGUgugCGccgcGCAGauuGCUGCCGAa -3'
miRNA:   3'- uUGGGUCCAaa-GCc---CGUC---CGGCGGCU- -5'
26754 3' -61.2 NC_005808.1 + 39088 0.68 0.233762
Target:  5'- gAACUCGGGUUcUCGcGcugcguacugguacaGCGGGCCGUCGAa -3'
miRNA:   3'- -UUGGGUCCAA-AGC-C---------------CGUCCGGCGGCU- -5'
26754 3' -61.2 NC_005808.1 + 13327 0.68 0.225426
Target:  5'- cGGCgUAGGcUUUC-GGCAGGUCGCCGc -3'
miRNA:   3'- -UUGgGUCC-AAAGcCCGUCCGGCGGCu -5'
26754 3' -61.2 NC_005808.1 + 8539 0.69 0.202991
Target:  5'- uGCCCAGGUaUC--GCAGGCCGCgcuCGAc -3'
miRNA:   3'- uUGGGUCCAaAGccCGUCCGGCG---GCU- -5'
26754 3' -61.2 NC_005808.1 + 31229 0.69 0.202991
Target:  5'- cACCgAGGUgcCGGGCgagcAGGUCGCCa- -3'
miRNA:   3'- uUGGgUCCAaaGCCCG----UCCGGCGGcu -5'
26754 3' -61.2 NC_005808.1 + 32351 0.69 0.197693
Target:  5'- cGCCCAGG--UCGcuGCGGucGCCGCCGAg -3'
miRNA:   3'- uUGGGUCCaaAGCc-CGUC--CGGCGGCU- -5'
26754 3' -61.2 NC_005808.1 + 718 0.69 0.18746
Target:  5'- cGCCCAGGaUagGGGC-GGCUuuGCCGAc -3'
miRNA:   3'- uUGGGUCCaAagCCCGuCCGG--CGGCU- -5'
26754 3' -61.2 NC_005808.1 + 27746 0.7 0.182519
Target:  5'- cGCCCAGcGUg-CGGcGCuGGCCGCCa- -3'
miRNA:   3'- uUGGGUC-CAaaGCC-CGuCCGGCGGcu -5'
26754 3' -61.2 NC_005808.1 + 2671 0.7 0.177695
Target:  5'- cGCCCAGGUgUUCGaucagccacGGCAGGuuGUCGu -3'
miRNA:   3'- uUGGGUCCA-AAGC---------CCGUCCggCGGCu -5'
26754 3' -61.2 NC_005808.1 + 31672 0.7 0.16884
Target:  5'- uGCCCgAGGcccugcaaaccggCGGGCAGGUCGCCa- -3'
miRNA:   3'- uUGGG-UCCaaa----------GCCCGUCCGGCGGcu -5'
26754 3' -61.2 NC_005808.1 + 7678 0.7 0.163896
Target:  5'- gGGgCCAGGUcgUCGGGCuugaccucGGCgGCCGGc -3'
miRNA:   3'- -UUgGGUCCAa-AGCCCGu-------CCGgCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.