miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26754 5' -56 NC_005808.1 + 13615 0.66 0.605108
Target:  5'- cCUUGCCGACa-GCaUCGGUAgcggcagcaaguccGGCGCg -3'
miRNA:   3'- uGAGCGGUUGaaCG-AGCCGUa-------------CCGCG- -5'
26754 5' -56 NC_005808.1 + 4265 0.66 0.600621
Target:  5'- gGC-CGUCAGC--GC-CGGCAUGGUGa -3'
miRNA:   3'- -UGaGCGGUUGaaCGaGCCGUACCGCg -5'
26754 5' -56 NC_005808.1 + 11772 0.66 0.600621
Target:  5'- ---aGCgGAUUUGC-CGGCAgaaUGGUGCc -3'
miRNA:   3'- ugagCGgUUGAACGaGCCGU---ACCGCG- -5'
26754 5' -56 NC_005808.1 + 16205 0.66 0.600621
Target:  5'- uGCUgGCCGAgaaGUUCGaGCAguccaagGGCGCg -3'
miRNA:   3'- -UGAgCGGUUgaaCGAGC-CGUa------CCGCG- -5'
26754 5' -56 NC_005808.1 + 32795 0.66 0.600621
Target:  5'- --aCGCUgcuuGACUgGUUCGGCGUG-CGCg -3'
miRNA:   3'- ugaGCGG----UUGAaCGAGCCGUACcGCG- -5'
26754 5' -56 NC_005808.1 + 4809 0.66 0.589425
Target:  5'- ---gGCCAGCUUGUagaggUCGGgGccGGCGCc -3'
miRNA:   3'- ugagCGGUUGAACG-----AGCCgUa-CCGCG- -5'
26754 5' -56 NC_005808.1 + 215 0.66 0.589425
Target:  5'- cACg-GCgAACUggcgcacCUCGGCAuUGGCGCg -3'
miRNA:   3'- -UGagCGgUUGAac-----GAGCCGU-ACCGCG- -5'
26754 5' -56 NC_005808.1 + 23722 0.66 0.589425
Target:  5'- -gUCGCgGGCcagUGcCUCGGU--GGCGCg -3'
miRNA:   3'- ugAGCGgUUGa--AC-GAGCCGuaCCGCG- -5'
26754 5' -56 NC_005808.1 + 38954 0.66 0.588307
Target:  5'- uGCUUGUggacguggggUAACgaGUUCGGCGgcgugaaUGGCGCa -3'
miRNA:   3'- -UGAGCG----------GUUGaaCGAGCCGU-------ACCGCG- -5'
26754 5' -56 NC_005808.1 + 38564 0.66 0.588307
Target:  5'- gGCUgCGCuCGACccGCgCGGCAUgacgcugguggccGGCGCg -3'
miRNA:   3'- -UGA-GCG-GUUGaaCGaGCCGUA-------------CCGCG- -5'
26754 5' -56 NC_005808.1 + 24868 0.66 0.584957
Target:  5'- uUUCGCCAccaaaugcgcgcaGCUUGCcgcgaUgGGCAuuucccggcccgagUGGCGCu -3'
miRNA:   3'- uGAGCGGU-------------UGAACG-----AgCCGU--------------ACCGCG- -5'
26754 5' -56 NC_005808.1 + 26159 0.66 0.578267
Target:  5'- gGCUCGCCGuc-UGCgaugCGGUcgcagauuucgGUGGCGa -3'
miRNA:   3'- -UGAGCGGUugaACGa---GCCG-----------UACCGCg -5'
26754 5' -56 NC_005808.1 + 25997 0.66 0.578267
Target:  5'- gGCggCGCCAACaccaucgcgUGgUCGGCcucguccGGCGCg -3'
miRNA:   3'- -UGa-GCGGUUGa--------ACgAGCCGua-----CCGCG- -5'
26754 5' -56 NC_005808.1 + 14317 0.66 0.578267
Target:  5'- uCUgCGCCGugUcccaGCgcgCGGuCAUGGUGCg -3'
miRNA:   3'- uGA-GCGGUugAa---CGa--GCC-GUACCGCG- -5'
26754 5' -56 NC_005808.1 + 15759 0.66 0.578267
Target:  5'- aAUUCGCCcGCUccaUCGGgGcGGCGCa -3'
miRNA:   3'- -UGAGCGGuUGAacgAGCCgUaCCGCG- -5'
26754 5' -56 NC_005808.1 + 17046 0.66 0.578267
Target:  5'- --aCGCCGACaucaUCGGCuacgggGGCGCu -3'
miRNA:   3'- ugaGCGGUUGaacgAGCCGua----CCGCG- -5'
26754 5' -56 NC_005808.1 + 2723 0.66 0.567155
Target:  5'- gUUgGCCGgacGCUUGagcgCGGCccGGCGCu -3'
miRNA:   3'- uGAgCGGU---UGAACga--GCCGuaCCGCG- -5'
26754 5' -56 NC_005808.1 + 34367 0.66 0.567155
Target:  5'- cUUCGCCGACgaggGCaCGGCc--GCGCa -3'
miRNA:   3'- uGAGCGGUUGaa--CGaGCCGuacCGCG- -5'
26754 5' -56 NC_005808.1 + 17672 0.66 0.567155
Target:  5'- --gCGUCGGCggGCUgGGCGUaGGCGa -3'
miRNA:   3'- ugaGCGGUUGaaCGAgCCGUA-CCGCg -5'
26754 5' -56 NC_005808.1 + 1099 0.66 0.567155
Target:  5'- cUUgGCCGugUcGCgCGGCAUGucGCGCa -3'
miRNA:   3'- uGAgCGGUugAaCGaGCCGUAC--CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.