Results 41 - 60 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26755 | 3' | -54.4 | NC_005808.1 | + | 21157 | 0.68 | 0.582753 |
Target: 5'- uCCGCGCCCuGGUUcaaCAGCGcgGCc- -3' miRNA: 3'- -GGCGCGGGuCCAAcg-GUUGCuuUGcu -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 23713 | 0.68 | 0.582753 |
Target: 5'- -aGCGCCCAGGUcgcggGCCAGUGccuCGGu -3' miRNA: 3'- ggCGCGGGUCCAa----CGGUUGCuuuGCU- -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 4432 | 0.68 | 0.571684 |
Target: 5'- gCCGCGCCaGGGggaagccGCCAGCGGuGGCa- -3' miRNA: 3'- -GGCGCGGgUCCaa-----CGGUUGCU-UUGcu -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 5534 | 0.67 | 0.638548 |
Target: 5'- gCCGCccagguuccGCCCAGGUcGCCcgccACGGuaucGACGGc -3' miRNA: 3'- -GGCG---------CGGGUCCAaCGGu---UGCU----UUGCU- -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 39718 | 0.67 | 0.635192 |
Target: 5'- uCUGUGCCCAucaccuucuugcauGGcucUGCCAACGcuACGGc -3' miRNA: 3'- -GGCGCGGGU--------------CCa--ACGGUUGCuuUGCU- -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 29428 | 0.67 | 0.637429 |
Target: 5'- -gGCGCCCAGcGcgGCCGAcacuggccgacauCGAGGCGc -3' miRNA: 3'- ggCGCGGGUC-CaaCGGUU-------------GCUUUGCu -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 9632 | 0.67 | 0.672031 |
Target: 5'- -gGCGUCCGGGUcuUGCCAGuaauCGAcGCa- -3' miRNA: 3'- ggCGCGGGUCCA--ACGGUU----GCUuUGcu -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 31523 | 0.67 | 0.660894 |
Target: 5'- gCUGgGCCUcgcuGuGUUGCCGugGAAACa- -3' miRNA: 3'- -GGCgCGGGu---C-CAACGGUugCUUUGcu -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 18574 | 0.67 | 0.62736 |
Target: 5'- gCCGCGCUCGcGGUgacggccugGCCGucCGAGACu- -3' miRNA: 3'- -GGCGCGGGU-CCAa--------CGGUu-GCUUUGcu -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 14829 | 0.67 | 0.638548 |
Target: 5'- gCCuuCGCCCAGGUcgaUGCCGuugGCGGccAGCGc -3' miRNA: 3'- -GGc-GCGGGUCCA---ACGGU---UGCU--UUGCu -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 28790 | 0.67 | 0.638548 |
Target: 5'- gCGCuuGCCCuGGUUGCCGAUcuuGAGCa- -3' miRNA: 3'- gGCG--CGGGuCCAACGGUUGc--UUUGcu -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 30086 | 0.67 | 0.649729 |
Target: 5'- gCgGCGCCCGGGc-GCCA-CGGcccuugucccaGGCGAu -3' miRNA: 3'- -GgCGCGGGUCCaaCGGUuGCU-----------UUGCU- -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 39877 | 0.67 | 0.649729 |
Target: 5'- gCCGCGCUCaAGcGUccgGCCAACGuguucaccACGAa -3' miRNA: 3'- -GGCGCGGG-UC-CAa--CGGUUGCuu------UGCU- -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 41528 | 0.67 | 0.660894 |
Target: 5'- aCGCGCgCCGGGUcGCaCAggaaauccGCG-AGCGAa -3' miRNA: 3'- gGCGCG-GGUCCAaCG-GU--------UGCuUUGCU- -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 8857 | 0.67 | 0.672031 |
Target: 5'- gCGCguugGCCUcGGUcGCC-ACGAAGCGGg -3' miRNA: 3'- gGCG----CGGGuCCAaCGGuUGCUUUGCU- -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 42068 | 0.67 | 0.672031 |
Target: 5'- cCCGCGCacguCCgAGGUauucgGCCAGCGAuggcccAACGu -3' miRNA: 3'- -GGCGCG----GG-UCCAa----CGGUUGCU------UUGCu -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 8555 | 0.66 | 0.726902 |
Target: 5'- gCCGCGCCgAuGGcgGgCAGCGAcaggcGCGAc -3' miRNA: 3'- -GGCGCGGgU-CCaaCgGUUGCUu----UGCU- -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 39952 | 0.66 | 0.694177 |
Target: 5'- aCCGCugGCCCuuccgcaaaguGGUgGCUGACGAaucGACGAa -3' miRNA: 3'- -GGCG--CGGGu----------CCAaCGGUUGCU---UUGCU- -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 25548 | 0.66 | 0.716076 |
Target: 5'- -aGCGCCCccGUaGCCGAUGAuguCGGc -3' miRNA: 3'- ggCGCGGGucCAaCGGUUGCUuu-GCU- -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 33066 | 0.66 | 0.716076 |
Target: 5'- gUGCGCUucauCGGGUcGCgCAGCGAcGCGGc -3' miRNA: 3'- gGCGCGG----GUCCAaCG-GUUGCUuUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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