miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26755 3' -54.4 NC_005808.1 + 3925 0.7 0.444918
Target:  5'- gCCGCGCCCccaugcGaGUUugaaaGCCAGCGAAcgGCGGa -3'
miRNA:   3'- -GGCGCGGGu-----C-CAA-----CGGUUGCUU--UGCU- -5'
26755 3' -54.4 NC_005808.1 + 32346 0.7 0.465035
Target:  5'- aCCGcCGCCCAGGUcgcugcggucGCCGcCGAGGCc- -3'
miRNA:   3'- -GGC-GCGGGUCCAa---------CGGUuGCUUUGcu -5'
26755 3' -54.4 NC_005808.1 + 16813 0.7 0.465035
Target:  5'- gUCGCGCCCAGGcgGCgCAguucACGcgGCGc -3'
miRNA:   3'- -GGCGCGGGUCCaaCG-GU----UGCuuUGCu -5'
26755 3' -54.4 NC_005808.1 + 4788 0.7 0.465035
Target:  5'- aCUGCGCCCAGcacgccgGCUGGCGcuGCGGg -3'
miRNA:   3'- -GGCGCGGGUCcaa----CGGUUGCuuUGCU- -5'
26755 3' -54.4 NC_005808.1 + 22233 0.7 0.475269
Target:  5'- aCGCgGCCCuGGUUGUCGGCc--GCGAu -3'
miRNA:   3'- gGCG-CGGGuCCAACGGUUGcuuUGCU- -5'
26755 3' -54.4 NC_005808.1 + 15384 0.7 0.475269
Target:  5'- gCGCGUCCGcGUgcggGCCGGCGAagaugccgGACGAc -3'
miRNA:   3'- gGCGCGGGUcCAa---CGGUUGCU--------UUGCU- -5'
26755 3' -54.4 NC_005808.1 + 36988 0.7 0.485615
Target:  5'- aUCGaCGCCguGGcuaCCAACGAGGCGGa -3'
miRNA:   3'- -GGC-GCGGguCCaacGGUUGCUUUGCU- -5'
26755 3' -54.4 NC_005808.1 + 32417 0.7 0.496067
Target:  5'- gCCGCGCgCCAcGUcUGCCAagACGAcggcAGCGAc -3'
miRNA:   3'- -GGCGCG-GGUcCA-ACGGU--UGCU----UUGCU- -5'
26755 3' -54.4 NC_005808.1 + 19728 0.69 0.506619
Target:  5'- gCCGCgcaucGCCCugcuugggcuGGUUGCCGuuguugccggccACGAGGCGGu -3'
miRNA:   3'- -GGCG-----CGGGu---------CCAACGGU------------UGCUUUGCU- -5'
26755 3' -54.4 NC_005808.1 + 15154 0.69 0.528
Target:  5'- aUGCGCCCAGGgcgacgGCUGAUGuuGCu- -3'
miRNA:   3'- gGCGCGGGUCCaa----CGGUUGCuuUGcu -5'
26755 3' -54.4 NC_005808.1 + 16000 0.69 0.528
Target:  5'- gCCGCGCgCAGGgacaggucGCCGgugACGAAACc- -3'
miRNA:   3'- -GGCGCGgGUCCaa------CGGU---UGCUUUGcu -5'
26755 3' -54.4 NC_005808.1 + 27744 0.68 0.55847
Target:  5'- -gGCGCCCAGcGUgcggcgcuggccGCCAACGGcaucgaccugGGCGAa -3'
miRNA:   3'- ggCGCGGGUC-CAa-----------CGGUUGCU----------UUGCU- -5'
26755 3' -54.4 NC_005808.1 + 4432 0.68 0.571684
Target:  5'- gCCGCGCCaGGGggaagccGCCAGCGGuGGCa- -3'
miRNA:   3'- -GGCGCGGgUCCaa-----CGGUUGCU-UUGcu -5'
26755 3' -54.4 NC_005808.1 + 21157 0.68 0.582753
Target:  5'- uCCGCGCCCuGGUUcaaCAGCGcgGCc- -3'
miRNA:   3'- -GGCGCGGGuCCAAcg-GUUGCuuUGcu -5'
26755 3' -54.4 NC_005808.1 + 23713 0.68 0.582753
Target:  5'- -aGCGCCCAGGUcgcggGCCAGUGccuCGGu -3'
miRNA:   3'- ggCGCGGGUCCAa----CGGUUGCuuuGCU- -5'
26755 3' -54.4 NC_005808.1 + 8177 0.68 0.593864
Target:  5'- gUGCGCCCGGaugcUGCCGGCGAu---- -3'
miRNA:   3'- gGCGCGGGUCca--ACGGUUGCUuugcu -5'
26755 3' -54.4 NC_005808.1 + 29090 0.68 0.593864
Target:  5'- -gGCGCCgAGGUcagGCCcguGCGGGACu- -3'
miRNA:   3'- ggCGCGGgUCCAa--CGGu--UGCUUUGcu -5'
26755 3' -54.4 NC_005808.1 + 35517 0.68 0.605009
Target:  5'- gCGCGCCguGGguagGCCGcgGCGucAUGAa -3'
miRNA:   3'- gGCGCGGguCCaa--CGGU--UGCuuUGCU- -5'
26755 3' -54.4 NC_005808.1 + 32517 0.68 0.605009
Target:  5'- uCCGCGCCCGugcaggcuGGUgaUGCCGGCcaGGAugcugccgccgGCGAu -3'
miRNA:   3'- -GGCGCGGGU--------CCA--ACGGUUG--CUU-----------UGCU- -5'
26755 3' -54.4 NC_005808.1 + 32018 0.68 0.605009
Target:  5'- gCGCGCCUGGGUacuacGCC--CGAGGCGc -3'
miRNA:   3'- gGCGCGGGUCCAa----CGGuuGCUUUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.