miRNA display CGI


Results 41 - 60 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26755 3' -54.4 NC_005808.1 + 22233 0.7 0.475269
Target:  5'- aCGCgGCCCuGGUUGUCGGCc--GCGAu -3'
miRNA:   3'- gGCG-CGGGuCCAACGGUUGcuuUGCU- -5'
26755 3' -54.4 NC_005808.1 + 32346 0.7 0.465035
Target:  5'- aCCGcCGCCCAGGUcgcugcggucGCCGcCGAGGCc- -3'
miRNA:   3'- -GGC-GCGGGUCCAa---------CGGUuGCUUUGcu -5'
26755 3' -54.4 NC_005808.1 + 4788 0.7 0.465035
Target:  5'- aCUGCGCCCAGcacgccgGCUGGCGcuGCGGg -3'
miRNA:   3'- -GGCGCGGGUCcaa----CGGUUGCuuUGCU- -5'
26755 3' -54.4 NC_005808.1 + 16813 0.7 0.465035
Target:  5'- gUCGCGCCCAGGcgGCgCAguucACGcgGCGc -3'
miRNA:   3'- -GGCGCGGGUCCaaCG-GU----UGCuuUGCu -5'
26755 3' -54.4 NC_005808.1 + 3925 0.7 0.444918
Target:  5'- gCCGCGCCCccaugcGaGUUugaaaGCCAGCGAAcgGCGGa -3'
miRNA:   3'- -GGCGCGGGu-----C-CAA-----CGGUUGCUU--UGCU- -5'
26755 3' -54.4 NC_005808.1 + 31089 0.71 0.435044
Target:  5'- gCCGCuGCUCAccucGGUgcagGCCGGCGAGugguGCGAg -3'
miRNA:   3'- -GGCG-CGGGU----CCAa---CGGUUGCUU----UGCU- -5'
26755 3' -54.4 NC_005808.1 + 25094 0.71 0.415683
Target:  5'- gCGCGCCCGGc--GCCGugGGAuacaGCGGg -3'
miRNA:   3'- gGCGCGGGUCcaaCGGUugCUU----UGCU- -5'
26755 3' -54.4 NC_005808.1 + 6639 0.71 0.396859
Target:  5'- gCGCGCggacacguaCAGGUUGCCGGgGAAGCc- -3'
miRNA:   3'- gGCGCGg--------GUCCAACGGUUgCUUUGcu -5'
26755 3' -54.4 NC_005808.1 + 13018 0.72 0.360899
Target:  5'- gCGCGCCUGGGcgcgGCCGACcuGAcGCGAu -3'
miRNA:   3'- gGCGCGGGUCCaa--CGGUUG--CUuUGCU- -5'
26755 3' -54.4 NC_005808.1 + 5423 0.72 0.360899
Target:  5'- aCCGUGUCCAcGUUGCCGauacuguuuGCGAcaauGACGAu -3'
miRNA:   3'- -GGCGCGGGUcCAACGGU---------UGCU----UUGCU- -5'
26755 3' -54.4 NC_005808.1 + 41977 0.72 0.341274
Target:  5'- cCCGCGCCgAGGcugagGCCAucaucgccgacaugGCGAAGCa- -3'
miRNA:   3'- -GGCGCGGgUCCaa---CGGU--------------UGCUUUGcu -5'
26755 3' -54.4 NC_005808.1 + 13100 0.73 0.332986
Target:  5'- gCGCGCaaucuugagccguuCCGGGUUGCCGGCcAGGCGu -3'
miRNA:   3'- gGCGCG--------------GGUCCAACGGUUGcUUUGCu -5'
26755 3' -54.4 NC_005808.1 + 814 0.73 0.327272
Target:  5'- gCCGCGCCCAGcccUUGCCgAACGu--CGGc -3'
miRNA:   3'- -GGCGCGGGUCc--AACGG-UUGCuuuGCU- -5'
26755 3' -54.4 NC_005808.1 + 29148 0.73 0.31135
Target:  5'- aCCGCGCCCgAGGccGCCAagcugGCGGgccugccguggGACGAg -3'
miRNA:   3'- -GGCGCGGG-UCCaaCGGU-----UGCU-----------UUGCU- -5'
26755 3' -54.4 NC_005808.1 + 8066 0.74 0.267143
Target:  5'- gCGCGCCCAGGUcgcUGCCu-UGAuAUGGg -3'
miRNA:   3'- gGCGCGGGUCCA---ACGGuuGCUuUGCU- -5'
26755 3' -54.4 NC_005808.1 + 29588 0.75 0.24962
Target:  5'- gCCGCGCCCAGGcgcgcgguuugccagUUGuCCAGCGccGGGCGc -3'
miRNA:   3'- -GGCGCGGGUCC---------------AAC-GGUUGC--UUUGCu -5'
26755 3' -54.4 NC_005808.1 + 16857 0.75 0.24701
Target:  5'- gCGCGCCCAGcGUgcUGCCGcCGGugagGACGAc -3'
miRNA:   3'- gGCGCGGGUC-CA--ACGGUuGCU----UUGCU- -5'
26755 3' -54.4 NC_005808.1 + 1305 0.77 0.179267
Target:  5'- gCCGCGCCCAGGgcgacggccaccagGCCGAC-AAGCGc -3'
miRNA:   3'- -GGCGCGGGUCCaa------------CGGUUGcUUUGCu -5'
26755 3' -54.4 NC_005808.1 + 5373 0.77 0.178283
Target:  5'- aCCGCGCCCAGGguuaUGUCAcuggugcGCGccGCGAg -3'
miRNA:   3'- -GGCGCGGGUCCa---ACGGU-------UGCuuUGCU- -5'
26755 3' -54.4 NC_005808.1 + 35897 0.78 0.155638
Target:  5'- gCGCGCCCAGGacaaggugUGCCugcACGAuGCGAc -3'
miRNA:   3'- gGCGCGGGUCCa-------ACGGu--UGCUuUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.