miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26755 3' -54.4 NC_005808.1 + 69 0.88 0.032213
Target:  5'- uCCGCGCCUAgGGUUGCCu-CGAAGCGAg -3'
miRNA:   3'- -GGCGCGGGU-CCAACGGuuGCUUUGCU- -5'
26755 3' -54.4 NC_005808.1 + 814 0.73 0.327272
Target:  5'- gCCGCGCCCAGcccUUGCCgAACGu--CGGc -3'
miRNA:   3'- -GGCGCGGGUCc--AACGG-UUGCuuuGCU- -5'
26755 3' -54.4 NC_005808.1 + 1305 0.77 0.179267
Target:  5'- gCCGCGCCCAGGgcgacggccaccagGCCGAC-AAGCGc -3'
miRNA:   3'- -GGCGCGGGUCCaa------------CGGUUGcUUUGCu -5'
26755 3' -54.4 NC_005808.1 + 3925 0.7 0.444918
Target:  5'- gCCGCGCCCccaugcGaGUUugaaaGCCAGCGAAcgGCGGa -3'
miRNA:   3'- -GGCGCGGGu-----C-CAA-----CGGUUGCUU--UGCU- -5'
26755 3' -54.4 NC_005808.1 + 4432 0.68 0.571684
Target:  5'- gCCGCGCCaGGGggaagccGCCAGCGGuGGCa- -3'
miRNA:   3'- -GGCGCGGgUCCaa-----CGGUUGCU-UUGcu -5'
26755 3' -54.4 NC_005808.1 + 4788 0.7 0.465035
Target:  5'- aCUGCGCCCAGcacgccgGCUGGCGcuGCGGg -3'
miRNA:   3'- -GGCGCGGGUCcaa----CGGUUGCuuUGCU- -5'
26755 3' -54.4 NC_005808.1 + 5373 0.77 0.178283
Target:  5'- aCCGCGCCCAGGguuaUGUCAcuggugcGCGccGCGAg -3'
miRNA:   3'- -GGCGCGGGUCCa---ACGGU-------UGCuuUGCU- -5'
26755 3' -54.4 NC_005808.1 + 5423 0.72 0.360899
Target:  5'- aCCGUGUCCAcGUUGCCGauacuguuuGCGAcaauGACGAu -3'
miRNA:   3'- -GGCGCGGGUcCAACGGU---------UGCU----UUGCU- -5'
26755 3' -54.4 NC_005808.1 + 5534 0.67 0.638548
Target:  5'- gCCGCccagguuccGCCCAGGUcGCCcgccACGGuaucGACGGc -3'
miRNA:   3'- -GGCG---------CGGGUCCAaCGGu---UGCU----UUGCU- -5'
26755 3' -54.4 NC_005808.1 + 6639 0.71 0.396859
Target:  5'- gCGCGCggacacguaCAGGUUGCCGGgGAAGCc- -3'
miRNA:   3'- gGCGCGg--------GUCCAACGGUUgCUUUGcu -5'
26755 3' -54.4 NC_005808.1 + 7498 0.82 0.0783
Target:  5'- aCCGCGCCCagcAGGUUGCCGAgGAuGGCGu -3'
miRNA:   3'- -GGCGCGGG---UCCAACGGUUgCU-UUGCu -5'
26755 3' -54.4 NC_005808.1 + 7777 0.66 0.726902
Target:  5'- cUCGCGCCUuc---GCCcuGCGAGGCGAu -3'
miRNA:   3'- -GGCGCGGGuccaaCGGu-UGCUUUGCU- -5'
26755 3' -54.4 NC_005808.1 + 8066 0.74 0.267143
Target:  5'- gCGCGCCCAGGUcgcUGCCu-UGAuAUGGg -3'
miRNA:   3'- gGCGCGGGUCCA---ACGGuuGCUuUGCU- -5'
26755 3' -54.4 NC_005808.1 + 8177 0.68 0.593864
Target:  5'- gUGCGCCCGGaugcUGCCGGCGAu---- -3'
miRNA:   3'- gGCGCGGGUCca--ACGGUUGCUuugcu -5'
26755 3' -54.4 NC_005808.1 + 8555 0.66 0.726902
Target:  5'- gCCGCGCCgAuGGcgGgCAGCGAcaggcGCGAc -3'
miRNA:   3'- -GGCGCGGgU-CCaaCgGUUGCUu----UGCU- -5'
26755 3' -54.4 NC_005808.1 + 8687 0.68 0.609474
Target:  5'- gCGcCGCCCAGGUgugcgccgcgcagauUGCUGcCGAAcACGAa -3'
miRNA:   3'- gGC-GCGGGUCCA---------------ACGGUuGCUU-UGCU- -5'
26755 3' -54.4 NC_005808.1 + 8857 0.67 0.672031
Target:  5'- gCGCguugGCCUcGGUcGCC-ACGAAGCGGg -3'
miRNA:   3'- gGCG----CGGGuCCAaCGGuUGCUUUGCU- -5'
26755 3' -54.4 NC_005808.1 + 9632 0.67 0.672031
Target:  5'- -gGCGUCCGGGUcuUGCCAGuaauCGAcGCa- -3'
miRNA:   3'- ggCGCGGGUCCA--ACGGUU----GCUuUGcu -5'
26755 3' -54.4 NC_005808.1 + 11931 0.66 0.694177
Target:  5'- gCCGUGCCCAGGcUGgaCAGuacCGAcuCGAu -3'
miRNA:   3'- -GGCGCGGGUCCaACg-GUU---GCUuuGCU- -5'
26755 3' -54.4 NC_005808.1 + 13018 0.72 0.360899
Target:  5'- gCGCGCCUGGGcgcgGCCGACcuGAcGCGAu -3'
miRNA:   3'- gGCGCGGGUCCaa--CGGUUG--CUuUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.