miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26755 3' -54.4 NC_005808.1 + 13100 0.73 0.332986
Target:  5'- gCGCGCaaucuugagccguuCCGGGUUGCCGGCcAGGCGu -3'
miRNA:   3'- gGCGCG--------------GGUCCAACGGUUGcUUUGCu -5'
26755 3' -54.4 NC_005808.1 + 14829 0.67 0.638548
Target:  5'- gCCuuCGCCCAGGUcgaUGCCGuugGCGGccAGCGc -3'
miRNA:   3'- -GGc-GCGGGUCCA---ACGGU---UGCU--UUGCu -5'
26755 3' -54.4 NC_005808.1 + 15154 0.69 0.528
Target:  5'- aUGCGCCCAGGgcgacgGCUGAUGuuGCu- -3'
miRNA:   3'- gGCGCGGGUCCaa----CGGUUGCuuUGcu -5'
26755 3' -54.4 NC_005808.1 + 15384 0.7 0.475269
Target:  5'- gCGCGUCCGcGUgcggGCCGGCGAagaugccgGACGAc -3'
miRNA:   3'- gGCGCGGGUcCAa---CGGUUGCU--------UUGCU- -5'
26755 3' -54.4 NC_005808.1 + 15602 0.68 0.616177
Target:  5'- aCCGCGCCaucggcCAGGaUGCUGACGGuuuucccuuCGAg -3'
miRNA:   3'- -GGCGCGG------GUCCaACGGUUGCUuu-------GCU- -5'
26755 3' -54.4 NC_005808.1 + 16000 0.69 0.528
Target:  5'- gCCGCGCgCAGGgacaggucGCCGgugACGAAACc- -3'
miRNA:   3'- -GGCGCGgGUCCaa------CGGU---UGCUUUGcu -5'
26755 3' -54.4 NC_005808.1 + 16813 0.7 0.465035
Target:  5'- gUCGCGCCCAGGcgGCgCAguucACGcgGCGc -3'
miRNA:   3'- -GGCGCGGGUCCaaCG-GU----UGCuuUGCu -5'
26755 3' -54.4 NC_005808.1 + 16857 0.75 0.24701
Target:  5'- gCGCGCCCAGcGUgcUGCCGcCGGugagGACGAc -3'
miRNA:   3'- gGCGCGGGUC-CA--ACGGUuGCU----UUGCU- -5'
26755 3' -54.4 NC_005808.1 + 18574 0.67 0.62736
Target:  5'- gCCGCGCUCGcGGUgacggccugGCCGucCGAGACu- -3'
miRNA:   3'- -GGCGCGGGU-CCAa--------CGGUu-GCUUUGcu -5'
26755 3' -54.4 NC_005808.1 + 19728 0.69 0.506619
Target:  5'- gCCGCgcaucGCCCugcuugggcuGGUUGCCGuuguugccggccACGAGGCGGu -3'
miRNA:   3'- -GGCG-----CGGGu---------CCAACGGU------------UGCUUUGCU- -5'
26755 3' -54.4 NC_005808.1 + 21157 0.68 0.582753
Target:  5'- uCCGCGCCCuGGUUcaaCAGCGcgGCc- -3'
miRNA:   3'- -GGCGCGGGuCCAAcg-GUUGCuuUGcu -5'
26755 3' -54.4 NC_005808.1 + 21343 1.11 0.000688
Target:  5'- aCCGCGCCCAGGUUGCCAACGAAACGAu -3'
miRNA:   3'- -GGCGCGGGUCCAACGGUUGCUUUGCU- -5'
26755 3' -54.4 NC_005808.1 + 22233 0.7 0.475269
Target:  5'- aCGCgGCCCuGGUUGUCGGCc--GCGAu -3'
miRNA:   3'- gGCG-CGGGuCCAACGGUUGcuuUGCU- -5'
26755 3' -54.4 NC_005808.1 + 23713 0.68 0.582753
Target:  5'- -aGCGCCCAGGUcgcggGCCAGUGccuCGGu -3'
miRNA:   3'- ggCGCGGGUCCAa----CGGUUGCuuuGCU- -5'
26755 3' -54.4 NC_005808.1 + 24982 0.79 0.130361
Target:  5'- aCGCGCCCacccaccagcacaaAGGggGCCGACGAcAGCGGg -3'
miRNA:   3'- gGCGCGGG--------------UCCaaCGGUUGCU-UUGCU- -5'
26755 3' -54.4 NC_005808.1 + 25094 0.71 0.415683
Target:  5'- gCGCGCCCGGc--GCCGugGGAuacaGCGGg -3'
miRNA:   3'- gGCGCGGGUCcaaCGGUugCUU----UGCU- -5'
26755 3' -54.4 NC_005808.1 + 25311 0.66 0.683129
Target:  5'- gCGCGCCCGcGgcGCCGGCuucguGGACGGc -3'
miRNA:   3'- gGCGCGGGUcCaaCGGUUGc----UUUGCU- -5'
26755 3' -54.4 NC_005808.1 + 25548 0.66 0.716076
Target:  5'- -aGCGCCCccGUaGCCGAUGAuguCGGc -3'
miRNA:   3'- ggCGCGGGucCAaCGGUUGCUuu-GCU- -5'
26755 3' -54.4 NC_005808.1 + 27744 0.68 0.55847
Target:  5'- -gGCGCCCAGcGUgcggcgcuggccGCCAACGGcaucgaccugGGCGAa -3'
miRNA:   3'- ggCGCGGGUC-CAa-----------CGGUUGCU----------UUGCU- -5'
26755 3' -54.4 NC_005808.1 + 28790 0.67 0.638548
Target:  5'- gCGCuuGCCCuGGUUGCCGAUcuuGAGCa- -3'
miRNA:   3'- gGCG--CGGGuCCAACGGUUGc--UUUGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.