Results 41 - 60 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26755 | 3' | -54.4 | NC_005808.1 | + | 29090 | 0.68 | 0.593864 |
Target: 5'- -gGCGCCgAGGUcagGCCcguGCGGGACu- -3' miRNA: 3'- ggCGCGGgUCCAa--CGGu--UGCUUUGcu -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 29148 | 0.73 | 0.31135 |
Target: 5'- aCCGCGCCCgAGGccGCCAagcugGCGGgccugccguggGACGAg -3' miRNA: 3'- -GGCGCGGG-UCCaaCGGU-----UGCU-----------UUGCU- -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 29428 | 0.67 | 0.637429 |
Target: 5'- -gGCGCCCAGcGcgGCCGAcacuggccgacauCGAGGCGc -3' miRNA: 3'- ggCGCGGGUC-CaaCGGUU-------------GCUUUGCu -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 29444 | 0.79 | 0.127437 |
Target: 5'- gUCGCGCCCAGG-UGCUccuggcaccaggcGACGAAGCGc -3' miRNA: 3'- -GGCGCGGGUCCaACGG-------------UUGCUUUGCu -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 29588 | 0.75 | 0.24962 |
Target: 5'- gCCGCGCCCAGGcgcgcgguuugccagUUGuCCAGCGccGGGCGc -3' miRNA: 3'- -GGCGCGGGUCC---------------AAC-GGUUGC--UUUGCu -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 30086 | 0.67 | 0.649729 |
Target: 5'- gCgGCGCCCGGGc-GCCA-CGGcccuugucccaGGCGAu -3' miRNA: 3'- -GgCGCGGGUCCaaCGGUuGCU-----------UUGCU- -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 30505 | 0.66 | 0.726902 |
Target: 5'- aCCGUGCUCAaccaGCCGAagGAAGCGAa -3' miRNA: 3'- -GGCGCGGGUccaaCGGUUg-CUUUGCU- -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 31089 | 0.71 | 0.435044 |
Target: 5'- gCCGCuGCUCAccucGGUgcagGCCGGCGAGugguGCGAg -3' miRNA: 3'- -GGCG-CGGGU----CCAa---CGGUUGCUU----UGCU- -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 31523 | 0.67 | 0.660894 |
Target: 5'- gCUGgGCCUcgcuGuGUUGCCGugGAAACa- -3' miRNA: 3'- -GGCgCGGGu---C-CAACGGUugCUUUGcu -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 32018 | 0.68 | 0.605009 |
Target: 5'- gCGCGCCUGGGUacuacGCC--CGAGGCGc -3' miRNA: 3'- gGCGCGGGUCCAa----CGGuuGCUUUGCu -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 32346 | 0.7 | 0.465035 |
Target: 5'- aCCGcCGCCCAGGUcgcugcggucGCCGcCGAGGCc- -3' miRNA: 3'- -GGC-GCGGGUCCAa---------CGGUuGCUUUGcu -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 32417 | 0.7 | 0.496067 |
Target: 5'- gCCGCGCgCCAcGUcUGCCAagACGAcggcAGCGAc -3' miRNA: 3'- -GGCGCG-GGUcCA-ACGGU--UGCU----UUGCU- -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 32517 | 0.68 | 0.605009 |
Target: 5'- uCCGCGCCCGugcaggcuGGUgaUGCCGGCcaGGAugcugccgccgGCGAu -3' miRNA: 3'- -GGCGCGGGU--------CCA--ACGGUUG--CUU-----------UGCU- -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 33066 | 0.66 | 0.716076 |
Target: 5'- gUGCGCUucauCGGGUcGCgCAGCGAcGCGGc -3' miRNA: 3'- gGCGCGG----GUCCAaCG-GUUGCUuUGCU- -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 33281 | 0.68 | 0.616177 |
Target: 5'- gCCGCGCcgacgugcgccgCCAGGUcGCCGAgGAAGu-- -3' miRNA: 3'- -GGCGCG------------GGUCCAaCGGUUgCUUUgcu -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 33401 | 0.66 | 0.683129 |
Target: 5'- gCCGCGCCgCcgAGcagGCCAACGucGACGGc -3' miRNA: 3'- -GGCGCGG-G--UCcaaCGGUUGCu-UUGCU- -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 35517 | 0.68 | 0.605009 |
Target: 5'- gCGCGCCguGGguagGCCGcgGCGucAUGAa -3' miRNA: 3'- gGCGCGGguCCaa--CGGU--UGCuuUGCU- -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 35897 | 0.78 | 0.155638 |
Target: 5'- gCGCGCCCAGGacaaggugUGCCugcACGAuGCGAc -3' miRNA: 3'- gGCGCGGGUCCa-------ACGGu--UGCUuUGCU- -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 36988 | 0.7 | 0.485615 |
Target: 5'- aUCGaCGCCguGGcuaCCAACGAGGCGGa -3' miRNA: 3'- -GGC-GCGGguCCaacGGUUGCUUUGCU- -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 39718 | 0.67 | 0.635192 |
Target: 5'- uCUGUGCCCAucaccuucuugcauGGcucUGCCAACGcuACGGc -3' miRNA: 3'- -GGCGCGGGU--------------CCa--ACGGUUGCuuUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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