Results 41 - 60 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26755 | 3' | -54.4 | NC_005808.1 | + | 15602 | 0.68 | 0.616177 |
Target: 5'- aCCGCGCCaucggcCAGGaUGCUGACGGuuuucccuuCGAg -3' miRNA: 3'- -GGCGCGG------GUCCaACGGUUGCUuu-------GCU- -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 15384 | 0.7 | 0.475269 |
Target: 5'- gCGCGUCCGcGUgcggGCCGGCGAagaugccgGACGAc -3' miRNA: 3'- gGCGCGGGUcCAa---CGGUUGCU--------UUGCU- -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 15154 | 0.69 | 0.528 |
Target: 5'- aUGCGCCCAGGgcgacgGCUGAUGuuGCu- -3' miRNA: 3'- gGCGCGGGUCCaa----CGGUUGCuuUGcu -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 14829 | 0.67 | 0.638548 |
Target: 5'- gCCuuCGCCCAGGUcgaUGCCGuugGCGGccAGCGc -3' miRNA: 3'- -GGc-GCGGGUCCA---ACGGU---UGCU--UUGCu -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 13100 | 0.73 | 0.332986 |
Target: 5'- gCGCGCaaucuugagccguuCCGGGUUGCCGGCcAGGCGu -3' miRNA: 3'- gGCGCG--------------GGUCCAACGGUUGcUUUGCu -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 13018 | 0.72 | 0.360899 |
Target: 5'- gCGCGCCUGGGcgcgGCCGACcuGAcGCGAu -3' miRNA: 3'- gGCGCGGGUCCaa--CGGUUG--CUuUGCU- -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 11931 | 0.66 | 0.694177 |
Target: 5'- gCCGUGCCCAGGcUGgaCAGuacCGAcuCGAu -3' miRNA: 3'- -GGCGCGGGUCCaACg-GUU---GCUuuGCU- -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 9632 | 0.67 | 0.672031 |
Target: 5'- -gGCGUCCGGGUcuUGCCAGuaauCGAcGCa- -3' miRNA: 3'- ggCGCGGGUCCA--ACGGUU----GCUuUGcu -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 8857 | 0.67 | 0.672031 |
Target: 5'- gCGCguugGCCUcGGUcGCC-ACGAAGCGGg -3' miRNA: 3'- gGCG----CGGGuCCAaCGGuUGCUUUGCU- -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 8687 | 0.68 | 0.609474 |
Target: 5'- gCGcCGCCCAGGUgugcgccgcgcagauUGCUGcCGAAcACGAa -3' miRNA: 3'- gGC-GCGGGUCCA---------------ACGGUuGCUU-UGCU- -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 8555 | 0.66 | 0.726902 |
Target: 5'- gCCGCGCCgAuGGcgGgCAGCGAcaggcGCGAc -3' miRNA: 3'- -GGCGCGGgU-CCaaCgGUUGCUu----UGCU- -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 8177 | 0.68 | 0.593864 |
Target: 5'- gUGCGCCCGGaugcUGCCGGCGAu---- -3' miRNA: 3'- gGCGCGGGUCca--ACGGUUGCUuugcu -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 8066 | 0.74 | 0.267143 |
Target: 5'- gCGCGCCCAGGUcgcUGCCu-UGAuAUGGg -3' miRNA: 3'- gGCGCGGGUCCA---ACGGuuGCUuUGCU- -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 7777 | 0.66 | 0.726902 |
Target: 5'- cUCGCGCCUuc---GCCcuGCGAGGCGAu -3' miRNA: 3'- -GGCGCGGGuccaaCGGu-UGCUUUGCU- -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 7498 | 0.82 | 0.0783 |
Target: 5'- aCCGCGCCCagcAGGUUGCCGAgGAuGGCGu -3' miRNA: 3'- -GGCGCGGG---UCCAACGGUUgCU-UUGCu -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 6639 | 0.71 | 0.396859 |
Target: 5'- gCGCGCggacacguaCAGGUUGCCGGgGAAGCc- -3' miRNA: 3'- gGCGCGg--------GUCCAACGGUUgCUUUGcu -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 5534 | 0.67 | 0.638548 |
Target: 5'- gCCGCccagguuccGCCCAGGUcGCCcgccACGGuaucGACGGc -3' miRNA: 3'- -GGCG---------CGGGUCCAaCGGu---UGCU----UUGCU- -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 5423 | 0.72 | 0.360899 |
Target: 5'- aCCGUGUCCAcGUUGCCGauacuguuuGCGAcaauGACGAu -3' miRNA: 3'- -GGCGCGGGUcCAACGGU---------UGCU----UUGCU- -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 5373 | 0.77 | 0.178283 |
Target: 5'- aCCGCGCCCAGGguuaUGUCAcuggugcGCGccGCGAg -3' miRNA: 3'- -GGCGCGGGUCCa---ACGGU-------UGCuuUGCU- -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 4788 | 0.7 | 0.465035 |
Target: 5'- aCUGCGCCCAGcacgccgGCUGGCGcuGCGGg -3' miRNA: 3'- -GGCGCGGGUCcaa----CGGUUGCuuUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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