Results 21 - 40 of 65 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26755 | 3' | -54.4 | NC_005808.1 | + | 15154 | 0.69 | 0.528 |
Target: 5'- aUGCGCCCAGGgcgacgGCUGAUGuuGCu- -3' miRNA: 3'- gGCGCGGGUCCaa----CGGUUGCuuUGcu -5' |
|||||||
26755 | 3' | -54.4 | NC_005808.1 | + | 19728 | 0.69 | 0.506619 |
Target: 5'- gCCGCgcaucGCCCugcuugggcuGGUUGCCGuuguugccggccACGAGGCGGu -3' miRNA: 3'- -GGCG-----CGGGu---------CCAACGGU------------UGCUUUGCU- -5' |
|||||||
26755 | 3' | -54.4 | NC_005808.1 | + | 13100 | 0.73 | 0.332986 |
Target: 5'- gCGCGCaaucuugagccguuCCGGGUUGCCGGCcAGGCGu -3' miRNA: 3'- gGCGCG--------------GGUCCAACGGUUGcUUUGCu -5' |
|||||||
26755 | 3' | -54.4 | NC_005808.1 | + | 814 | 0.73 | 0.327272 |
Target: 5'- gCCGCGCCCAGcccUUGCCgAACGu--CGGc -3' miRNA: 3'- -GGCGCGGGUCc--AACGG-UUGCuuuGCU- -5' |
|||||||
26755 | 3' | -54.4 | NC_005808.1 | + | 8066 | 0.74 | 0.267143 |
Target: 5'- gCGCGCCCAGGUcgcUGCCu-UGAuAUGGg -3' miRNA: 3'- gGCGCGGGUCCA---ACGGuuGCUuUGCU- -5' |
|||||||
26755 | 3' | -54.4 | NC_005808.1 | + | 29588 | 0.75 | 0.24962 |
Target: 5'- gCCGCGCCCAGGcgcgcgguuugccagUUGuCCAGCGccGGGCGc -3' miRNA: 3'- -GGCGCGGGUCC---------------AAC-GGUUGC--UUUGCu -5' |
|||||||
26755 | 3' | -54.4 | NC_005808.1 | + | 1305 | 0.77 | 0.179267 |
Target: 5'- gCCGCGCCCAGGgcgacggccaccagGCCGAC-AAGCGc -3' miRNA: 3'- -GGCGCGGGUCCaa------------CGGUUGcUUUGCu -5' |
|||||||
26755 | 3' | -54.4 | NC_005808.1 | + | 35897 | 0.78 | 0.155638 |
Target: 5'- gCGCGCCCAGGacaaggugUGCCugcACGAuGCGAc -3' miRNA: 3'- gGCGCGGGUCCa-------ACGGu--UGCUuUGCU- -5' |
|||||||
26755 | 3' | -54.4 | NC_005808.1 | + | 24982 | 0.79 | 0.130361 |
Target: 5'- aCGCGCCCacccaccagcacaaAGGggGCCGACGAcAGCGGg -3' miRNA: 3'- gGCGCGGG--------------UCCaaCGGUUGCU-UUGCU- -5' |
|||||||
26755 | 3' | -54.4 | NC_005808.1 | + | 29444 | 0.79 | 0.127437 |
Target: 5'- gUCGCGCCCAGG-UGCUccuggcaccaggcGACGAAGCGc -3' miRNA: 3'- -GGCGCGGGUCCaACGG-------------UUGCUUUGCu -5' |
|||||||
26755 | 3' | -54.4 | NC_005808.1 | + | 41977 | 0.72 | 0.341274 |
Target: 5'- cCCGCGCCgAGGcugagGCCAucaucgccgacaugGCGAAGCa- -3' miRNA: 3'- -GGCGCGGgUCCaa---CGGU--------------UGCUUUGcu -5' |
|||||||
26755 | 3' | -54.4 | NC_005808.1 | + | 5423 | 0.72 | 0.360899 |
Target: 5'- aCCGUGUCCAcGUUGCCGauacuguuuGCGAcaauGACGAu -3' miRNA: 3'- -GGCGCGGGUcCAACGGU---------UGCU----UUGCU- -5' |
|||||||
26755 | 3' | -54.4 | NC_005808.1 | + | 32417 | 0.7 | 0.496067 |
Target: 5'- gCCGCGCgCCAcGUcUGCCAagACGAcggcAGCGAc -3' miRNA: 3'- -GGCGCG-GGUcCA-ACGGU--UGCU----UUGCU- -5' |
|||||||
26755 | 3' | -54.4 | NC_005808.1 | + | 22233 | 0.7 | 0.475269 |
Target: 5'- aCGCgGCCCuGGUUGUCGGCc--GCGAu -3' miRNA: 3'- gGCG-CGGGuCCAACGGUUGcuuUGCU- -5' |
|||||||
26755 | 3' | -54.4 | NC_005808.1 | + | 15384 | 0.7 | 0.475269 |
Target: 5'- gCGCGUCCGcGUgcggGCCGGCGAagaugccgGACGAc -3' miRNA: 3'- gGCGCGGGUcCAa---CGGUUGCU--------UUGCU- -5' |
|||||||
26755 | 3' | -54.4 | NC_005808.1 | + | 32346 | 0.7 | 0.465035 |
Target: 5'- aCCGcCGCCCAGGUcgcugcggucGCCGcCGAGGCc- -3' miRNA: 3'- -GGC-GCGGGUCCAa---------CGGUuGCUUUGcu -5' |
|||||||
26755 | 3' | -54.4 | NC_005808.1 | + | 4788 | 0.7 | 0.465035 |
Target: 5'- aCUGCGCCCAGcacgccgGCUGGCGcuGCGGg -3' miRNA: 3'- -GGCGCGGGUCcaa----CGGUUGCuuUGCU- -5' |
|||||||
26755 | 3' | -54.4 | NC_005808.1 | + | 16813 | 0.7 | 0.465035 |
Target: 5'- gUCGCGCCCAGGcgGCgCAguucACGcgGCGc -3' miRNA: 3'- -GGCGCGGGUCCaaCG-GU----UGCuuUGCu -5' |
|||||||
26755 | 3' | -54.4 | NC_005808.1 | + | 31089 | 0.71 | 0.435044 |
Target: 5'- gCCGCuGCUCAccucGGUgcagGCCGGCGAGugguGCGAg -3' miRNA: 3'- -GGCG-CGGGU----CCAa---CGGUUGCUU----UGCU- -5' |
|||||||
26755 | 3' | -54.4 | NC_005808.1 | + | 25094 | 0.71 | 0.415683 |
Target: 5'- gCGCGCCCGGc--GCCGugGGAuacaGCGGg -3' miRNA: 3'- gGCGCGGGUCcaaCGGUugCUU----UGCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home