Results 1 - 20 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26755 | 3' | -54.4 | NC_005808.1 | + | 69 | 0.88 | 0.032213 |
Target: 5'- uCCGCGCCUAgGGUUGCCu-CGAAGCGAg -3' miRNA: 3'- -GGCGCGGGU-CCAACGGuuGCUUUGCU- -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 25311 | 0.66 | 0.683129 |
Target: 5'- gCGCGCCCGcGgcGCCGGCuucguGGACGGc -3' miRNA: 3'- gGCGCGGGUcCaaCGGUUGc----UUUGCU- -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 7777 | 0.66 | 0.726902 |
Target: 5'- cUCGCGCCUuc---GCCcuGCGAGGCGAu -3' miRNA: 3'- -GGCGCGGGuccaaCGGu-UGCUUUGCU- -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 8555 | 0.66 | 0.726902 |
Target: 5'- gCCGCGCCgAuGGcgGgCAGCGAcaggcGCGAc -3' miRNA: 3'- -GGCGCGGgU-CCaaCgGUUGCUu----UGCU- -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 29148 | 0.73 | 0.31135 |
Target: 5'- aCCGCGCCCgAGGccGCCAagcugGCGGgccugccguggGACGAg -3' miRNA: 3'- -GGCGCGGG-UCCaaCGGU-----UGCU-----------UUGCU- -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 13018 | 0.72 | 0.360899 |
Target: 5'- gCGCGCCUGGGcgcgGCCGACcuGAcGCGAu -3' miRNA: 3'- gGCGCGGGUCCaa--CGGUUG--CUuUGCU- -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 3925 | 0.7 | 0.444918 |
Target: 5'- gCCGCGCCCccaugcGaGUUugaaaGCCAGCGAAcgGCGGa -3' miRNA: 3'- -GGCGCGGGu-----C-CAA-----CGGUUGCUU--UGCU- -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 36988 | 0.7 | 0.485615 |
Target: 5'- aUCGaCGCCguGGcuaCCAACGAGGCGGa -3' miRNA: 3'- -GGC-GCGGguCCaacGGUUGCUUUGCU- -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 35517 | 0.68 | 0.605009 |
Target: 5'- gCGCGCCguGGguagGCCGcgGCGucAUGAa -3' miRNA: 3'- gGCGCGGguCCaa--CGGU--UGCuuUGCU- -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 9632 | 0.67 | 0.672031 |
Target: 5'- -gGCGUCCGGGUcuUGCCAGuaauCGAcGCa- -3' miRNA: 3'- ggCGCGGGUCCA--ACGGUU----GCUuUGcu -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 33281 | 0.68 | 0.616177 |
Target: 5'- gCCGCGCcgacgugcgccgCCAGGUcGCCGAgGAAGu-- -3' miRNA: 3'- -GGCGCG------------GGUCCAaCGGUUgCUUUgcu -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 32018 | 0.68 | 0.605009 |
Target: 5'- gCGCGCCUGGGUacuacGCC--CGAGGCGc -3' miRNA: 3'- gGCGCGGGUCCAa----CGGuuGCUUUGCu -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 7498 | 0.82 | 0.0783 |
Target: 5'- aCCGCGCCCagcAGGUUGCCGAgGAuGGCGu -3' miRNA: 3'- -GGCGCGGG---UCCAACGGUUgCU-UUGCu -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 39718 | 0.67 | 0.635192 |
Target: 5'- uCUGUGCCCAucaccuucuugcauGGcucUGCCAACGcuACGGc -3' miRNA: 3'- -GGCGCGGGU--------------CCa--ACGGUUGCuuUGCU- -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 5373 | 0.77 | 0.178283 |
Target: 5'- aCCGCGCCCAGGguuaUGUCAcuggugcGCGccGCGAg -3' miRNA: 3'- -GGCGCGGGUCCa---ACGGU-------UGCuuUGCU- -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 27744 | 0.68 | 0.55847 |
Target: 5'- -gGCGCCCAGcGUgcggcgcuggccGCCAACGGcaucgaccugGGCGAa -3' miRNA: 3'- ggCGCGGGUC-CAa-----------CGGUUGCU----------UUGCU- -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 29428 | 0.67 | 0.637429 |
Target: 5'- -gGCGCCCAGcGcgGCCGAcacuggccgacauCGAGGCGc -3' miRNA: 3'- ggCGCGGGUC-CaaCGGUU-------------GCUUUGCu -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 33401 | 0.66 | 0.683129 |
Target: 5'- gCCGCGCCgCcgAGcagGCCAACGucGACGGc -3' miRNA: 3'- -GGCGCGG-G--UCcaaCGGUUGCu-UUGCU- -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 16857 | 0.75 | 0.24701 |
Target: 5'- gCGCGCCCAGcGUgcUGCCGcCGGugagGACGAc -3' miRNA: 3'- gGCGCGGGUC-CA--ACGGUuGCU----UUGCU- -5' |
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26755 | 3' | -54.4 | NC_005808.1 | + | 6639 | 0.71 | 0.396859 |
Target: 5'- gCGCGCggacacguaCAGGUUGCCGGgGAAGCc- -3' miRNA: 3'- gGCGCGg--------GUCCAACGGUUgCUUUGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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