miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26755 3' -54.4 NC_005808.1 + 33401 0.66 0.683129
Target:  5'- gCCGCGCCgCcgAGcagGCCAACGucGACGGc -3'
miRNA:   3'- -GGCGCGG-G--UCcaaCGGUUGCu-UUGCU- -5'
26755 3' -54.4 NC_005808.1 + 8555 0.66 0.726902
Target:  5'- gCCGCGCCgAuGGcgGgCAGCGAcaggcGCGAc -3'
miRNA:   3'- -GGCGCGGgU-CCaaCgGUUGCUu----UGCU- -5'
26755 3' -54.4 NC_005808.1 + 15602 0.68 0.616177
Target:  5'- aCCGCGCCaucggcCAGGaUGCUGACGGuuuucccuuCGAg -3'
miRNA:   3'- -GGCGCGG------GUCCaACGGUUGCUuu-------GCU- -5'
26755 3' -54.4 NC_005808.1 + 18574 0.67 0.62736
Target:  5'- gCCGCGCUCGcGGUgacggccugGCCGucCGAGACu- -3'
miRNA:   3'- -GGCGCGGGU-CCAa--------CGGUu-GCUUUGcu -5'
26755 3' -54.4 NC_005808.1 + 29588 0.75 0.24962
Target:  5'- gCCGCGCCCAGGcgcgcgguuugccagUUGuCCAGCGccGGGCGc -3'
miRNA:   3'- -GGCGCGGGUCC---------------AAC-GGUUGC--UUUGCu -5'
26755 3' -54.4 NC_005808.1 + 5534 0.67 0.638548
Target:  5'- gCCGCccagguuccGCCCAGGUcGCCcgccACGGuaucGACGGc -3'
miRNA:   3'- -GGCG---------CGGGUCCAaCGGu---UGCU----UUGCU- -5'
26755 3' -54.4 NC_005808.1 + 32517 0.68 0.605009
Target:  5'- uCCGCGCCCGugcaggcuGGUgaUGCCGGCcaGGAugcugccgccgGCGAu -3'
miRNA:   3'- -GGCGCGGGU--------CCA--ACGGUUG--CUU-----------UGCU- -5'
26755 3' -54.4 NC_005808.1 + 8177 0.68 0.593864
Target:  5'- gUGCGCCCGGaugcUGCCGGCGAu---- -3'
miRNA:   3'- gGCGCGGGUCca--ACGGUUGCUuugcu -5'
26755 3' -54.4 NC_005808.1 + 8066 0.74 0.267143
Target:  5'- gCGCGCCCAGGUcgcUGCCu-UGAuAUGGg -3'
miRNA:   3'- gGCGCGGGUCCA---ACGGuuGCUuUGCU- -5'
26755 3' -54.4 NC_005808.1 + 5423 0.72 0.360899
Target:  5'- aCCGUGUCCAcGUUGCCGauacuguuuGCGAcaauGACGAu -3'
miRNA:   3'- -GGCGCGGGUcCAACGGU---------UGCU----UUGCU- -5'
26755 3' -54.4 NC_005808.1 + 25094 0.71 0.415683
Target:  5'- gCGCGCCCGGc--GCCGugGGAuacaGCGGg -3'
miRNA:   3'- gGCGCGGGUCcaaCGGUugCUU----UGCU- -5'
26755 3' -54.4 NC_005808.1 + 31089 0.71 0.435044
Target:  5'- gCCGCuGCUCAccucGGUgcagGCCGGCGAGugguGCGAg -3'
miRNA:   3'- -GGCG-CGGGU----CCAa---CGGUUGCUU----UGCU- -5'
26755 3' -54.4 NC_005808.1 + 16813 0.7 0.465035
Target:  5'- gUCGCGCCCAGGcgGCgCAguucACGcgGCGc -3'
miRNA:   3'- -GGCGCGGGUCCaaCG-GU----UGCuuUGCu -5'
26755 3' -54.4 NC_005808.1 + 4788 0.7 0.465035
Target:  5'- aCUGCGCCCAGcacgccgGCUGGCGcuGCGGg -3'
miRNA:   3'- -GGCGCGGGUCcaa----CGGUUGCuuUGCU- -5'
26755 3' -54.4 NC_005808.1 + 15154 0.69 0.528
Target:  5'- aUGCGCCCAGGgcgacgGCUGAUGuuGCu- -3'
miRNA:   3'- gGCGCGGGUCCaa----CGGUUGCuuUGcu -5'
26755 3' -54.4 NC_005808.1 + 16000 0.69 0.528
Target:  5'- gCCGCGCgCAGGgacaggucGCCGgugACGAAACc- -3'
miRNA:   3'- -GGCGCGgGUCCaa------CGGU---UGCUUUGcu -5'
26755 3' -54.4 NC_005808.1 + 4432 0.68 0.571684
Target:  5'- gCCGCGCCaGGGggaagccGCCAGCGGuGGCa- -3'
miRNA:   3'- -GGCGCGGgUCCaa-----CGGUUGCU-UUGcu -5'
26755 3' -54.4 NC_005808.1 + 23713 0.68 0.582753
Target:  5'- -aGCGCCCAGGUcgcggGCCAGUGccuCGGu -3'
miRNA:   3'- ggCGCGGGUCCAa----CGGUUGCuuuGCU- -5'
26755 3' -54.4 NC_005808.1 + 21157 0.68 0.582753
Target:  5'- uCCGCGCCCuGGUUcaaCAGCGcgGCc- -3'
miRNA:   3'- -GGCGCGGGuCCAAcg-GUUGCuuUGcu -5'
26755 3' -54.4 NC_005808.1 + 29090 0.68 0.593864
Target:  5'- -gGCGCCgAGGUcagGCCcguGCGGGACu- -3'
miRNA:   3'- ggCGCGGgUCCAa--CGGu--UGCUUUGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.