miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26755 5' -58.5 NC_005808.1 + 27414 0.66 0.458811
Target:  5'- -gUCGUCGCGcgccUGGCGCaccGCgcccgGcGGCCg -3'
miRNA:   3'- caAGCAGCGUu---ACCGCG---CGa----C-CCGGa -5'
26755 5' -58.5 NC_005808.1 + 36011 0.66 0.458811
Target:  5'- --aCGUgGUGccGGcCGUGCUGGGCUa -3'
miRNA:   3'- caaGCAgCGUuaCC-GCGCGACCCGGa -5'
26755 5' -58.5 NC_005808.1 + 27972 0.66 0.448857
Target:  5'- --aCGUC-Cuc-GGUGgGCUGGGCCa -3'
miRNA:   3'- caaGCAGcGuuaCCGCgCGACCCGGa -5'
26755 5' -58.5 NC_005808.1 + 8574 0.66 0.439023
Target:  5'- uGggCGUCGUA--GGcCGCGCgUGcGGCCUg -3'
miRNA:   3'- -CaaGCAGCGUuaCC-GCGCG-AC-CCGGA- -5'
26755 5' -58.5 NC_005808.1 + 17297 0.66 0.433183
Target:  5'- --gCGcCGCg--GGCGCGCauccauuccggcauaUGGGCCg -3'
miRNA:   3'- caaGCaGCGuuaCCGCGCG---------------ACCCGGa -5'
26755 5' -58.5 NC_005808.1 + 31506 0.66 0.429314
Target:  5'- -cUUGcCGCc--GGCGUgcuGCUGGGCCUc -3'
miRNA:   3'- caAGCaGCGuuaCCGCG---CGACCCGGA- -5'
26755 5' -58.5 NC_005808.1 + 22473 0.66 0.429314
Target:  5'- -gUUGUCagGCGGaaccaggGGCGgGCUGGGCUg -3'
miRNA:   3'- caAGCAG--CGUUa------CCGCgCGACCCGGa -5'
26755 5' -58.5 NC_005808.1 + 4232 0.66 0.42835
Target:  5'- -aUCGUCGCAgacguagAUGGCGUaGUcGGuGCCg -3'
miRNA:   3'- caAGCAGCGU-------UACCGCG-CGaCC-CGGa -5'
26755 5' -58.5 NC_005808.1 + 37915 0.66 0.419732
Target:  5'- aUUC-UCGCcggcuauccGGCGCGCUGGuGCCc -3'
miRNA:   3'- cAAGcAGCGuua------CCGCGCGACC-CGGa -5'
26755 5' -58.5 NC_005808.1 + 14415 0.66 0.416883
Target:  5'- uGggCGUCGCca-GGCGCGCcugcggcaccguguUGGGCg- -3'
miRNA:   3'- -CaaGCAGCGuuaCCGCGCG--------------ACCCGga -5'
26755 5' -58.5 NC_005808.1 + 1765 0.67 0.410282
Target:  5'- --cCGgccugCGCc-UGGCGCGUcGGGCCg -3'
miRNA:   3'- caaGCa----GCGuuACCGCGCGaCCCGGa -5'
26755 5' -58.5 NC_005808.1 + 14308 0.67 0.410282
Target:  5'- -gUCGUUGCugaacUGGCGCGCgccuuGGCUg -3'
miRNA:   3'- caAGCAGCGuu---ACCGCGCGac---CCGGa -5'
26755 5' -58.5 NC_005808.1 + 14038 0.67 0.395438
Target:  5'- -gUCGUUGgAAUGGagcgcgaaagcccgGCGCUGGGCg- -3'
miRNA:   3'- caAGCAGCgUUACCg-------------CGCGACCCGga -5'
26755 5' -58.5 NC_005808.1 + 20645 0.67 0.391782
Target:  5'- -gUCGUuccgCGCAcuGUGccCGCGUUGGGCCUu -3'
miRNA:   3'- caAGCA----GCGU--UACc-GCGCGACCCGGA- -5'
26755 5' -58.5 NC_005808.1 + 26132 0.67 0.365073
Target:  5'- uGUUCGUCGCGGcagauuUGGCGCaGC-GGcucGCCg -3'
miRNA:   3'- -CAAGCAGCGUU------ACCGCG-CGaCC---CGGa -5'
26755 5' -58.5 NC_005808.1 + 35504 0.67 0.365073
Target:  5'- -aUCGUgCGCGugGGCGCGCcgUGGGUa- -3'
miRNA:   3'- caAGCA-GCGUuaCCGCGCG--ACCCGga -5'
26755 5' -58.5 NC_005808.1 + 30308 0.67 0.365073
Target:  5'- --cCGcCGUAGccGGCaCGCUGGGCCa -3'
miRNA:   3'- caaGCaGCGUUa-CCGcGCGACCCGGa -5'
26755 5' -58.5 NC_005808.1 + 39841 0.68 0.359884
Target:  5'- --gUGUCgGCAGUGGUcggcacgcccgagcaGCGCcGGGCCg -3'
miRNA:   3'- caaGCAG-CGUUACCG---------------CGCGaCCCGGa -5'
26755 5' -58.5 NC_005808.1 + 15859 0.68 0.356453
Target:  5'- ----aUCGCAGcgGGCGCGCUGgcgguGGCCc -3'
miRNA:   3'- caagcAGCGUUa-CCGCGCGAC-----CCGGa -5'
26755 5' -58.5 NC_005808.1 + 11351 0.68 0.356453
Target:  5'- --aCGUCGCcc-GGCucguaGCUGGGCCg -3'
miRNA:   3'- caaGCAGCGuuaCCGcg---CGACCCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.