Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26755 | 5' | -58.5 | NC_005808.1 | + | 233 | 0.71 | 0.214354 |
Target: 5'- -cUCG--GCAuUGGCGCGCUGGGUUUc -3' miRNA: 3'- caAGCagCGUuACCGCGCGACCCGGA- -5' |
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26755 | 5' | -58.5 | NC_005808.1 | + | 1765 | 0.67 | 0.410282 |
Target: 5'- --cCGgccugCGCc-UGGCGCGUcGGGCCg -3' miRNA: 3'- caaGCa----GCGuuACCGCGCGaCCCGGa -5' |
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26755 | 5' | -58.5 | NC_005808.1 | + | 4232 | 0.66 | 0.42835 |
Target: 5'- -aUCGUCGCAgacguagAUGGCGUaGUcGGuGCCg -3' miRNA: 3'- caAGCAGCGU-------UACCGCG-CGaCC-CGGa -5' |
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26755 | 5' | -58.5 | NC_005808.1 | + | 4512 | 0.68 | 0.315532 |
Target: 5'- cGggCGgCGCccgugaacGUGGCGUGCUGGGCg- -3' miRNA: 3'- -CaaGCaGCGu-------UACCGCGCGACCCGga -5' |
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26755 | 5' | -58.5 | NC_005808.1 | + | 7179 | 0.7 | 0.244578 |
Target: 5'- -cUUGUCGgAuucgggGGCGaCGCUGGGCUUg -3' miRNA: 3'- caAGCAGCgUua----CCGC-GCGACCCGGA- -5' |
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26755 | 5' | -58.5 | NC_005808.1 | + | 8574 | 0.66 | 0.439023 |
Target: 5'- uGggCGUCGUA--GGcCGCGCgUGcGGCCUg -3' miRNA: 3'- -CaaGCAGCGUuaCC-GCGCG-AC-CCGGA- -5' |
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26755 | 5' | -58.5 | NC_005808.1 | + | 9867 | 0.71 | 0.214354 |
Target: 5'- --gCGUgGCAccGGCGCGCUGcuucucGGCCa -3' miRNA: 3'- caaGCAgCGUuaCCGCGCGAC------CCGGa -5' |
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26755 | 5' | -58.5 | NC_005808.1 | + | 10767 | 0.68 | 0.314751 |
Target: 5'- cUUCGUCGguGagGGUGCGCagguucaUGGGCUUc -3' miRNA: 3'- cAAGCAGCguUa-CCGCGCG-------ACCCGGA- -5' |
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26755 | 5' | -58.5 | NC_005808.1 | + | 11351 | 0.68 | 0.356453 |
Target: 5'- --aCGUCGCcc-GGCucguaGCUGGGCCg -3' miRNA: 3'- caaGCAGCGuuaCCGcg---CGACCCGGa -5' |
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26755 | 5' | -58.5 | NC_005808.1 | + | 12900 | 0.71 | 0.214354 |
Target: 5'- -gUCGUCGCcuuUGGCgauGCGCUcGGCCg -3' miRNA: 3'- caAGCAGCGuu-ACCG---CGCGAcCCGGa -5' |
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26755 | 5' | -58.5 | NC_005808.1 | + | 14038 | 0.67 | 0.395438 |
Target: 5'- -gUCGUUGgAAUGGagcgcgaaagcccgGCGCUGGGCg- -3' miRNA: 3'- caAGCAGCgUUACCg-------------CGCGACCCGga -5' |
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26755 | 5' | -58.5 | NC_005808.1 | + | 14308 | 0.67 | 0.410282 |
Target: 5'- -gUCGUUGCugaacUGGCGCGCgccuuGGCUg -3' miRNA: 3'- caAGCAGCGuu---ACCGCGCGac---CCGGa -5' |
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26755 | 5' | -58.5 | NC_005808.1 | + | 14415 | 0.66 | 0.416883 |
Target: 5'- uGggCGUCGCca-GGCGCGCcugcggcaccguguUGGGCg- -3' miRNA: 3'- -CaaGCAGCGuuaCCGCGCG--------------ACCCGga -5' |
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26755 | 5' | -58.5 | NC_005808.1 | + | 15859 | 0.68 | 0.356453 |
Target: 5'- ----aUCGCAGcgGGCGCGCUGgcgguGGCCc -3' miRNA: 3'- caagcAGCGUUa-CCGCGCGAC-----CCGGa -5' |
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26755 | 5' | -58.5 | NC_005808.1 | + | 17297 | 0.66 | 0.433183 |
Target: 5'- --gCGcCGCg--GGCGCGCauccauuccggcauaUGGGCCg -3' miRNA: 3'- caaGCaGCGuuaCCGCGCG---------------ACCCGGa -5' |
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26755 | 5' | -58.5 | NC_005808.1 | + | 18064 | 0.73 | 0.150456 |
Target: 5'- --cCGgCGCGggGuGCGUGCUGGGCCg -3' miRNA: 3'- caaGCaGCGUuaC-CGCGCGACCCGGa -5' |
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26755 | 5' | -58.5 | NC_005808.1 | + | 20645 | 0.67 | 0.391782 |
Target: 5'- -gUCGUuccgCGCAcuGUGccCGCGUUGGGCCUu -3' miRNA: 3'- caAGCA----GCGU--UACc-GCGCGACCCGGA- -5' |
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26755 | 5' | -58.5 | NC_005808.1 | + | 21377 | 1.08 | 0.00037 |
Target: 5'- aGUUCGUCGCAAUGGCGCGCUGGGCCUg -3' miRNA: 3'- -CAAGCAGCGUUACCGCGCGACCCGGA- -5' |
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26755 | 5' | -58.5 | NC_005808.1 | + | 22473 | 0.66 | 0.429314 |
Target: 5'- -gUUGUCagGCGGaaccaggGGCGgGCUGGGCUg -3' miRNA: 3'- caAGCAG--CGUUa------CCGCgCGACCCGGa -5' |
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26755 | 5' | -58.5 | NC_005808.1 | + | 24629 | 0.68 | 0.339648 |
Target: 5'- --aCGUCGaaccacAUGGCGUGCcggcGGGCCa -3' miRNA: 3'- caaGCAGCgu----UACCGCGCGa---CCCGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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