miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26756 3' -58.2 NC_005808.1 + 18523 0.68 0.355351
Target:  5'- gCCCcGCGCGGucgccGCuACuGUGCGCGGcAUg -3'
miRNA:   3'- -GGGuUGCGCC-----CG-UGuCACGCGCCuUG- -5'
26756 3' -58.2 NC_005808.1 + 29617 0.68 0.390227
Target:  5'- gUCCAGCGcCGGGCGCuuGUG-GCcGGGCu -3'
miRNA:   3'- -GGGUUGC-GCCCGUGu-CACgCGcCUUG- -5'
26756 3' -58.2 NC_005808.1 + 15122 0.69 0.32273
Target:  5'- aUCCu-CGCGuGGUGC-GUGCGCGGcGCg -3'
miRNA:   3'- -GGGuuGCGC-CCGUGuCACGCGCCuUG- -5'
26756 3' -58.2 NC_005808.1 + 42428 0.69 0.338755
Target:  5'- gCCCAGCGacaccgGGGCGCAuccgccUGCGgGGAAg -3'
miRNA:   3'- -GGGUUGCg-----CCCGUGUc-----ACGCgCCUUg -5'
26756 3' -58.2 NC_005808.1 + 462 0.69 0.346982
Target:  5'- gCCAGCuuGCGGGCGCuGU-CGCGGu-- -3'
miRNA:   3'- gGGUUG--CGCCCGUGuCAcGCGCCuug -5'
26756 3' -58.2 NC_005808.1 + 28754 0.69 0.338755
Target:  5'- gUCCAGCGCGGuGCGCuucucgGCGCGcacGGCg -3'
miRNA:   3'- -GGGUUGCGCC-CGUGuca---CGCGCc--UUG- -5'
26756 3' -58.2 NC_005808.1 + 40834 0.69 0.338755
Target:  5'- gCCCGACGCGccaGGCGCAG-GC-CGGccauGACc -3'
miRNA:   3'- -GGGUUGCGC---CCGUGUCaCGcGCC----UUG- -5'
26756 3' -58.2 NC_005808.1 + 39025 0.7 0.280901
Target:  5'- aCCCGGCGCgucgcugaaauuuauGcGGCGCGGUugGCGGGACu -3'
miRNA:   3'- -GGGUUGCG---------------C-CCGUGUCAcgCGCCUUG- -5'
26756 3' -58.2 NC_005808.1 + 4037 0.7 0.278084
Target:  5'- gCC-GCGCGGGUcgagcGCAGccGgGCGGAACu -3'
miRNA:   3'- gGGuUGCGCCCG-----UGUCa-CgCGCCUUG- -5'
26756 3' -58.2 NC_005808.1 + 32586 0.7 0.299764
Target:  5'- aCCAGgGCGGGgGCcgGGcGCGCGGcACu -3'
miRNA:   3'- gGGUUgCGCCCgUG--UCaCGCGCCuUG- -5'
26756 3' -58.2 NC_005808.1 + 11588 0.71 0.242864
Target:  5'- gCCCAGggccgccggcuggcCGcCGGGCAgCAGUGCcaGCGGAAg -3'
miRNA:   3'- -GGGUU--------------GC-GCCCGU-GUCACG--CGCCUUg -5'
26756 3' -58.2 NC_005808.1 + 38383 0.71 0.251144
Target:  5'- -gCGACGauGGCACGGUGCGCGc--- -3'
miRNA:   3'- ggGUUGCgcCCGUGUCACGCGCcuug -5'
26756 3' -58.2 NC_005808.1 + 14778 0.71 0.251144
Target:  5'- gCCAcCGCGGGCAgcGcGCGCGaGGACg -3'
miRNA:   3'- gGGUuGCGCCCGUguCaCGCGC-CUUG- -5'
26756 3' -58.2 NC_005808.1 + 634 0.71 0.23238
Target:  5'- cCUCGGCGCGGGUgaACGGgucagGCG-GGGGCu -3'
miRNA:   3'- -GGGUUGCGCCCG--UGUCa----CGCgCCUUG- -5'
26756 3' -58.2 NC_005808.1 + 25190 0.71 0.224623
Target:  5'- -gCGACGUGGGCgccgcugaaucgaaGCGGUGCGuCGGcGCg -3'
miRNA:   3'- ggGUUGCGCCCG--------------UGUCACGC-GCCuUG- -5'
26756 3' -58.2 NC_005808.1 + 34371 0.71 0.251144
Target:  5'- gCCGACGaGGGCACGGccGCGCacGAACu -3'
miRNA:   3'- gGGUUGCgCCCGUGUCa-CGCGc-CUUG- -5'
26756 3' -58.2 NC_005808.1 + 15162 0.71 0.251144
Target:  5'- gCCAGggccugcggcCGcCGGGCGCGGUGCGCcaGGcGCg -3'
miRNA:   3'- gGGUU----------GC-GCCCGUGUCACGCG--CCuUG- -5'
26756 3' -58.2 NC_005808.1 + 30447 0.72 0.220537
Target:  5'- cCCCGacgccuACGCGGaaGCGCAGcGCGUGGcGCg -3'
miRNA:   3'- -GGGU------UGCGCC--CGUGUCaCGCGCCuUG- -5'
26756 3' -58.2 NC_005808.1 + 5747 0.72 0.21481
Target:  5'- gCCCAGCGCgccGGGCAgCgAGUGCGCcaGGGCc -3'
miRNA:   3'- -GGGUUGCG---CCCGU-G-UCACGCGc-CUUG- -5'
26756 3' -58.2 NC_005808.1 + 6619 0.73 0.188064
Target:  5'- aCCAgcggGCGCGuGGCGCuGcGCGCGGAcACg -3'
miRNA:   3'- gGGU----UGCGC-CCGUGuCaCGCGCCU-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.