miRNA display CGI


Results 41 - 50 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26756 3' -58.2 NC_005808.1 + 26987 0.73 0.168821
Target:  5'- aCCGACGCugcaagaacugGGGCuACAGcgGCGCGGAu- -3'
miRNA:   3'- gGGUUGCG-----------CCCG-UGUCa-CGCGCCUug -5'
26756 3' -58.2 NC_005808.1 + 6619 0.73 0.188064
Target:  5'- aCCAgcggGCGCGuGGCGCuGcGCGCGGAcACg -3'
miRNA:   3'- gGGU----UGCGC-CCGUGuCaCGCGCCU-UG- -5'
26756 3' -58.2 NC_005808.1 + 23716 0.73 0.168821
Target:  5'- gCCCAGguCGCGGGC-CAGUGCcucgGUGGcGCg -3'
miRNA:   3'- -GGGUU--GCGCCCGuGUCACG----CGCCuUG- -5'
26756 3' -58.2 NC_005808.1 + 17509 0.73 0.188064
Target:  5'- uCCCAcgGCGcCGGGCGCGcUGCGCuGGGugGCg -3'
miRNA:   3'- -GGGU--UGC-GCCCGUGUcACGCG-CCU--UG- -5'
26756 3' -58.2 NC_005808.1 + 37392 0.74 0.143257
Target:  5'- cCUCGACGUGGGCACGGUaGC-CGGcAAUa -3'
miRNA:   3'- -GGGUUGCGCCCGUGUCA-CGcGCC-UUG- -5'
26756 3' -58.2 NC_005808.1 + 14328 0.74 0.155564
Target:  5'- uCCCAGCGCGcGGuCAUGGUGCGC--AACa -3'
miRNA:   3'- -GGGUUGCGC-CC-GUGUCACGCGccUUG- -5'
26756 3' -58.2 NC_005808.1 + 36241 0.75 0.140905
Target:  5'- aCCCAGCGCcccggccuucgggccGGGCGCuuuGgcugGgGCGGAACg -3'
miRNA:   3'- -GGGUUGCG---------------CCCGUGu--Ca---CgCGCCUUG- -5'
26756 3' -58.2 NC_005808.1 + 37054 0.76 0.111503
Target:  5'- aCCGugGCGGGCGaccUGgGCGGAACc -3'
miRNA:   3'- gGGUugCGCCCGUgucACgCGCCUUG- -5'
26756 3' -58.2 NC_005808.1 + 37816 0.79 0.072802
Target:  5'- gCCGGCGUgcuGGGCGCAGUGUGgGcGAACg -3'
miRNA:   3'- gGGUUGCG---CCCGUGUCACGCgC-CUUG- -5'
26756 3' -58.2 NC_005808.1 + 21949 1.01 0.001661
Target:  5'- gCCCAACG-GGGCACAGUGCGCGGAACg -3'
miRNA:   3'- -GGGUUGCgCCCGUGUCACGCGCCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.