miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26756 3' -58.2 NC_005808.1 + 21949 1.01 0.001661
Target:  5'- gCCCAACG-GGGCACAGUGCGCGGAACg -3'
miRNA:   3'- -GGGUUGCgCCCGUGUCACGCGCCUUG- -5'
26756 3' -58.2 NC_005808.1 + 37816 0.79 0.072802
Target:  5'- gCCGGCGUgcuGGGCGCAGUGUGgGcGAACg -3'
miRNA:   3'- gGGUUGCG---CCCGUGUCACGCgC-CUUG- -5'
26756 3' -58.2 NC_005808.1 + 37054 0.76 0.111503
Target:  5'- aCCGugGCGGGCGaccUGgGCGGAACc -3'
miRNA:   3'- gGGUugCGCCCGUgucACgCGCCUUG- -5'
26756 3' -58.2 NC_005808.1 + 36241 0.75 0.140905
Target:  5'- aCCCAGCGCcccggccuucgggccGGGCGCuuuGgcugGgGCGGAACg -3'
miRNA:   3'- -GGGUUGCG---------------CCCGUGu--Ca---CgCGCCUUG- -5'
26756 3' -58.2 NC_005808.1 + 14328 0.74 0.155564
Target:  5'- uCCCAGCGCGcGGuCAUGGUGCGC--AACa -3'
miRNA:   3'- -GGGUUGCGC-CC-GUGUCACGCGccUUG- -5'
26756 3' -58.2 NC_005808.1 + 37392 0.74 0.143257
Target:  5'- cCUCGACGUGGGCACGGUaGC-CGGcAAUa -3'
miRNA:   3'- -GGGUUGCGCCCGUGUCA-CGcGCC-UUG- -5'
26756 3' -58.2 NC_005808.1 + 23716 0.73 0.168821
Target:  5'- gCCCAGguCGCGGGC-CAGUGCcucgGUGGcGCg -3'
miRNA:   3'- -GGGUU--GCGCCCGuGUCACG----CGCCuUG- -5'
26756 3' -58.2 NC_005808.1 + 26987 0.73 0.168821
Target:  5'- aCCGACGCugcaagaacugGGGCuACAGcgGCGCGGAu- -3'
miRNA:   3'- gGGUUGCG-----------CCCG-UGUCa-CGCGCCUug -5'
26756 3' -58.2 NC_005808.1 + 38877 0.73 0.183079
Target:  5'- aCCGGCGUGaacGGCACGGgcgccacgagcGCGUGGAACa -3'
miRNA:   3'- gGGUUGCGC---CCGUGUCa----------CGCGCCUUG- -5'
26756 3' -58.2 NC_005808.1 + 6619 0.73 0.188064
Target:  5'- aCCAgcggGCGCGuGGCGCuGcGCGCGGAcACg -3'
miRNA:   3'- gGGU----UGCGC-CCGUGuCaCGCGCCU-UG- -5'
26756 3' -58.2 NC_005808.1 + 17509 0.73 0.188064
Target:  5'- uCCCAcgGCGcCGGGCGCGcUGCGCuGGGugGCg -3'
miRNA:   3'- -GGGU--UGC-GCCCGUGUcACGCG-CCU--UG- -5'
26756 3' -58.2 NC_005808.1 + 5747 0.72 0.21481
Target:  5'- gCCCAGCGCgccGGGCAgCgAGUGCGCcaGGGCc -3'
miRNA:   3'- -GGGUUGCG---CCCGU-G-UCACGCGc-CUUG- -5'
26756 3' -58.2 NC_005808.1 + 30447 0.72 0.220537
Target:  5'- cCCCGacgccuACGCGGaaGCGCAGcGCGUGGcGCg -3'
miRNA:   3'- -GGGU------UGCGCC--CGUGUCaCGCGCCuUG- -5'
26756 3' -58.2 NC_005808.1 + 11588 0.71 0.242864
Target:  5'- gCCCAGggccgccggcuggcCGcCGGGCAgCAGUGCcaGCGGAAg -3'
miRNA:   3'- -GGGUU--------------GC-GCCCGU-GUCACG--CGCCUUg -5'
26756 3' -58.2 NC_005808.1 + 14778 0.71 0.251144
Target:  5'- gCCAcCGCGGGCAgcGcGCGCGaGGACg -3'
miRNA:   3'- gGGUuGCGCCCGUguCaCGCGC-CUUG- -5'
26756 3' -58.2 NC_005808.1 + 25190 0.71 0.224623
Target:  5'- -gCGACGUGGGCgccgcugaaucgaaGCGGUGCGuCGGcGCg -3'
miRNA:   3'- ggGUUGCGCCCG--------------UGUCACGC-GCCuUG- -5'
26756 3' -58.2 NC_005808.1 + 34371 0.71 0.251144
Target:  5'- gCCGACGaGGGCACGGccGCGCacGAACu -3'
miRNA:   3'- gGGUUGCgCCCGUGUCa-CGCGc-CUUG- -5'
26756 3' -58.2 NC_005808.1 + 634 0.71 0.23238
Target:  5'- cCUCGGCGCGGGUgaACGGgucagGCG-GGGGCu -3'
miRNA:   3'- -GGGUUGCGCCCG--UGUCa----CGCgCCUUG- -5'
26756 3' -58.2 NC_005808.1 + 15162 0.71 0.251144
Target:  5'- gCCAGggccugcggcCGcCGGGCGCGGUGCGCcaGGcGCg -3'
miRNA:   3'- gGGUU----------GC-GCCCGUGUCACGCG--CCuUG- -5'
26756 3' -58.2 NC_005808.1 + 38383 0.71 0.251144
Target:  5'- -gCGACGauGGCACGGUGCGCGc--- -3'
miRNA:   3'- ggGUUGCgcCCGUGUCACGCGCcuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.