miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26756 3' -58.2 NC_005808.1 + 4037 0.7 0.278084
Target:  5'- gCC-GCGCGGGUcgagcGCAGccGgGCGGAACu -3'
miRNA:   3'- gGGuUGCGCCCG-----UGUCa-CgCGCCUUG- -5'
26756 3' -58.2 NC_005808.1 + 32586 0.7 0.299764
Target:  5'- aCCAGgGCGGGgGCcgGGcGCGCGGcACu -3'
miRNA:   3'- gGGUUgCGCCCgUG--UCaCGCGCCuUG- -5'
26756 3' -58.2 NC_005808.1 + 39025 0.7 0.280901
Target:  5'- aCCCGGCGCgucgcugaaauuuauGcGGCGCGGUugGCGGGACu -3'
miRNA:   3'- -GGGUUGCG---------------C-CCGUGUCAcgCGCCUUG- -5'
26756 3' -58.2 NC_005808.1 + 42428 0.69 0.338755
Target:  5'- gCCCAGCGacaccgGGGCGCAuccgccUGCGgGGAAg -3'
miRNA:   3'- -GGGUUGCg-----CCCGUGUc-----ACGCgCCUUg -5'
26756 3' -58.2 NC_005808.1 + 15122 0.69 0.32273
Target:  5'- aUCCu-CGCGuGGUGC-GUGCGCGGcGCg -3'
miRNA:   3'- -GGGuuGCGC-CCGUGuCACGCGCCuUG- -5'
26756 3' -58.2 NC_005808.1 + 28754 0.69 0.338755
Target:  5'- gUCCAGCGCGGuGCGCuucucgGCGCGcacGGCg -3'
miRNA:   3'- -GGGUUGCGCC-CGUGuca---CGCGCc--UUG- -5'
26756 3' -58.2 NC_005808.1 + 40834 0.69 0.338755
Target:  5'- gCCCGACGCGccaGGCGCAG-GC-CGGccauGACc -3'
miRNA:   3'- -GGGUUGCGC---CCGUGUCaCGcGCC----UUG- -5'
26756 3' -58.2 NC_005808.1 + 462 0.69 0.346982
Target:  5'- gCCAGCuuGCGGGCGCuGU-CGCGGu-- -3'
miRNA:   3'- gGGUUG--CGCCCGUGuCAcGCGCCuug -5'
26756 3' -58.2 NC_005808.1 + 41304 0.68 0.372512
Target:  5'- gCCCuGgGCGcGGCGguGUGgGCGGGc- -3'
miRNA:   3'- -GGGuUgCGC-CCGUguCACgCGCCUug -5'
26756 3' -58.2 NC_005808.1 + 18523 0.68 0.355351
Target:  5'- gCCCcGCGCGGucgccGCuACuGUGCGCGGcAUg -3'
miRNA:   3'- -GGGuUGCGCC-----CG-UGuCACGCGCCuUG- -5'
26756 3' -58.2 NC_005808.1 + 8560 0.68 0.399289
Target:  5'- gCCgAugGCGGGCagcgACAG-GCGCGacACg -3'
miRNA:   3'- -GGgUugCGCCCG----UGUCaCGCGCcuUG- -5'
26756 3' -58.2 NC_005808.1 + 29617 0.68 0.390227
Target:  5'- gUCCAGCGcCGGGCGCuuGUG-GCcGGGCu -3'
miRNA:   3'- -GGGUUGC-GCCCGUGu-CACgCGcCUUG- -5'
26756 3' -58.2 NC_005808.1 + 31033 0.67 0.407559
Target:  5'- gCCGaggcaaucGCGCGGGC-CAacGUGCGCGaaggcccGAACa -3'
miRNA:   3'- gGGU--------UGCGCCCGuGU--CACGCGC-------CUUG- -5'
26756 3' -58.2 NC_005808.1 + 35055 0.67 0.408484
Target:  5'- aCCCGGCcGCGaGC-CAGcGUGCGGAAg -3'
miRNA:   3'- -GGGUUG-CGCcCGuGUCaCGCGCCUUg -5'
26756 3' -58.2 NC_005808.1 + 3741 0.67 0.427266
Target:  5'- gCCgGugGUGGGCACgucGGUGCcgccGCuGGACg -3'
miRNA:   3'- -GGgUugCGCCCGUG---UCACG----CGcCUUG- -5'
26756 3' -58.2 NC_005808.1 + 36161 0.67 0.456371
Target:  5'- gCCuuCGCGGGCGguG-GUGuCGcGAGCg -3'
miRNA:   3'- gGGuuGCGCCCGUguCaCGC-GC-CUUG- -5'
26756 3' -58.2 NC_005808.1 + 8841 0.67 0.417811
Target:  5'- gCCgCAACGCGGGC-CAGcGCGuUGGc-- -3'
miRNA:   3'- -GG-GUUGCGCCCGuGUCaCGC-GCCuug -5'
26756 3' -58.2 NC_005808.1 + 7378 0.66 0.476356
Target:  5'- gUCCAGCgGCGGGCAC----CGCGGcGACc -3'
miRNA:   3'- -GGGUUG-CGCCCGUGucacGCGCC-UUG- -5'
26756 3' -58.2 NC_005808.1 + 25084 0.66 0.496765
Target:  5'- aCCCAGCGCaGcGCGCccgGCGCcguGGGAUa -3'
miRNA:   3'- -GGGUUGCGcC-CGUGucaCGCG---CCUUG- -5'
26756 3' -58.2 NC_005808.1 + 17870 0.66 0.507117
Target:  5'- gCC-GCGCaGGCGCGGUGgaaGCGGcccGACc -3'
miRNA:   3'- gGGuUGCGcCCGUGUCACg--CGCC---UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.