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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
26756 | 3' | -58.2 | NC_005808.1 | + | 5861 | 0.66 | 0.507117 |
Target: 5'- gCUAuUGUGGGCGCAGaGCGCGa--- -3' miRNA: 3'- gGGUuGCGCCCGUGUCaCGCGCcuug -5' |
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26756 | 3' | -58.2 | NC_005808.1 | + | 39301 | 0.66 | 0.507117 |
Target: 5'- uCCCAuuGCGCaaagcaucccgaGGaaGCACGGcguUGCGCGGGAa -3' miRNA: 3'- -GGGU--UGCG------------CC--CGUGUC---ACGCGCCUUg -5' |
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26756 | 3' | -58.2 | NC_005808.1 | + | 34425 | 0.66 | 0.48651 |
Target: 5'- gCCGGCagcaucCGGGCGCAc-GCGCaGGGACg -3' miRNA: 3'- gGGUUGc-----GCCCGUGUcaCGCG-CCUUG- -5' |
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26756 | 3' | -58.2 | NC_005808.1 | + | 41781 | 0.66 | 0.476356 |
Target: 5'- gCCGACGUucggcaagggcuGGGCGCGGcGCGUcgccGGAAa -3' miRNA: 3'- gGGUUGCG------------CCCGUGUCaCGCG----CCUUg -5' |
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26756 | 3' | -58.2 | NC_005808.1 | + | 32058 | 0.66 | 0.476356 |
Target: 5'- aCCCGuuGCGCGuGGCgGCGGaaaGCGUGGccGGCg -3' miRNA: 3'- -GGGU--UGCGC-CCG-UGUCa--CGCGCC--UUG- -5' |
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26756 | 3' | -58.2 | NC_005808.1 | + | 22471 | 0.66 | 0.476356 |
Target: 5'- cCCCGAagGCGuGGCauucgacgACGGUGUGCuGGGCg -3' miRNA: 3'- -GGGUUg-CGC-CCG--------UGUCACGCGcCUUG- -5' |
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26756 | 3' | -58.2 | NC_005808.1 | + | 7378 | 0.66 | 0.476356 |
Target: 5'- gUCCAGCgGCGGGCAC----CGCGGcGACc -3' miRNA: 3'- -GGGUUG-CGCCCGUGucacGCGCC-UUG- -5' |
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26756 | 3' | -58.2 | NC_005808.1 | + | 25084 | 0.66 | 0.496765 |
Target: 5'- aCCCAGCGCaGcGCGCccgGCGCcguGGGAUa -3' miRNA: 3'- -GGGUUGCGcC-CGUGucaCGCG---CCUUG- -5' |
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26756 | 3' | -58.2 | NC_005808.1 | + | 24063 | 0.66 | 0.476356 |
Target: 5'- uUCC-AUGCcGcGCACAGUagcggcgaccGCGCGGGGCa -3' miRNA: 3'- -GGGuUGCGcC-CGUGUCA----------CGCGCCUUG- -5' |
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26756 | 3' | -58.2 | NC_005808.1 | + | 17870 | 0.66 | 0.507117 |
Target: 5'- gCC-GCGCaGGCGCGGUGgaaGCGGcccGACc -3' miRNA: 3'- gGGuUGCGcCCGUGUCACg--CGCC---UUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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