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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26756 | 3' | -58.2 | NC_005808.1 | + | 6619 | 0.73 | 0.188064 |
Target: 5'- aCCAgcggGCGCGuGGCGCuGcGCGCGGAcACg -3' miRNA: 3'- gGGU----UGCGC-CCGUGuCaCGCGCCU-UG- -5' |
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26756 | 3' | -58.2 | NC_005808.1 | + | 38877 | 0.73 | 0.183079 |
Target: 5'- aCCGGCGUGaacGGCACGGgcgccacgagcGCGUGGAACa -3' miRNA: 3'- gGGUUGCGC---CCGUGUCa----------CGCGCCUUG- -5' |
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26756 | 3' | -58.2 | NC_005808.1 | + | 26987 | 0.73 | 0.168821 |
Target: 5'- aCCGACGCugcaagaacugGGGCuACAGcgGCGCGGAu- -3' miRNA: 3'- gGGUUGCG-----------CCCG-UGUCa-CGCGCCUug -5' |
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26756 | 3' | -58.2 | NC_005808.1 | + | 23716 | 0.73 | 0.168821 |
Target: 5'- gCCCAGguCGCGGGC-CAGUGCcucgGUGGcGCg -3' miRNA: 3'- -GGGUU--GCGCCCGuGUCACG----CGCCuUG- -5' |
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26756 | 3' | -58.2 | NC_005808.1 | + | 14328 | 0.74 | 0.155564 |
Target: 5'- uCCCAGCGCGcGGuCAUGGUGCGC--AACa -3' miRNA: 3'- -GGGUUGCGC-CC-GUGUCACGCGccUUG- -5' |
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26756 | 3' | -58.2 | NC_005808.1 | + | 37392 | 0.74 | 0.143257 |
Target: 5'- cCUCGACGUGGGCACGGUaGC-CGGcAAUa -3' miRNA: 3'- -GGGUUGCGCCCGUGUCA-CGcGCC-UUG- -5' |
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26756 | 3' | -58.2 | NC_005808.1 | + | 36241 | 0.75 | 0.140905 |
Target: 5'- aCCCAGCGCcccggccuucgggccGGGCGCuuuGgcugGgGCGGAACg -3' miRNA: 3'- -GGGUUGCG---------------CCCGUGu--Ca---CgCGCCUUG- -5' |
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26756 | 3' | -58.2 | NC_005808.1 | + | 37054 | 0.76 | 0.111503 |
Target: 5'- aCCGugGCGGGCGaccUGgGCGGAACc -3' miRNA: 3'- gGGUugCGCCCGUgucACgCGCCUUG- -5' |
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26756 | 3' | -58.2 | NC_005808.1 | + | 37816 | 0.79 | 0.072802 |
Target: 5'- gCCGGCGUgcuGGGCGCAGUGUGgGcGAACg -3' miRNA: 3'- gGGUUGCG---CCCGUGUCACGCgC-CUUG- -5' |
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26756 | 3' | -58.2 | NC_005808.1 | + | 21949 | 1.01 | 0.001661 |
Target: 5'- gCCCAACG-GGGCACAGUGCGCGGAACg -3' miRNA: 3'- -GGGUUGCgCCCGUGUCACGCGCCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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