miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26756 3' -58.2 NC_005808.1 + 18523 0.68 0.355351
Target:  5'- gCCCcGCGCGGucgccGCuACuGUGCGCGGcAUg -3'
miRNA:   3'- -GGGuUGCGCC-----CG-UGuCACGCGCCuUG- -5'
26756 3' -58.2 NC_005808.1 + 21949 1.01 0.001661
Target:  5'- gCCCAACG-GGGCACAGUGCGCGGAACg -3'
miRNA:   3'- -GGGUUGCgCCCGUGUCACGCGCCUUG- -5'
26756 3' -58.2 NC_005808.1 + 22471 0.66 0.476356
Target:  5'- cCCCGAagGCGuGGCauucgacgACGGUGUGCuGGGCg -3'
miRNA:   3'- -GGGUUg-CGC-CCG--------UGUCACGCGcCUUG- -5'
26756 3' -58.2 NC_005808.1 + 23716 0.73 0.168821
Target:  5'- gCCCAGguCGCGGGC-CAGUGCcucgGUGGcGCg -3'
miRNA:   3'- -GGGUU--GCGCCCGuGUCACG----CGCCuUG- -5'
26756 3' -58.2 NC_005808.1 + 24063 0.66 0.476356
Target:  5'- uUCC-AUGCcGcGCACAGUagcggcgaccGCGCGGGGCa -3'
miRNA:   3'- -GGGuUGCGcC-CGUGUCA----------CGCGCCUUG- -5'
26756 3' -58.2 NC_005808.1 + 25084 0.66 0.496765
Target:  5'- aCCCAGCGCaGcGCGCccgGCGCcguGGGAUa -3'
miRNA:   3'- -GGGUUGCGcC-CGUGucaCGCG---CCUUG- -5'
26756 3' -58.2 NC_005808.1 + 25190 0.71 0.224623
Target:  5'- -gCGACGUGGGCgccgcugaaucgaaGCGGUGCGuCGGcGCg -3'
miRNA:   3'- ggGUUGCGCCCG--------------UGUCACGC-GCCuUG- -5'
26756 3' -58.2 NC_005808.1 + 26987 0.73 0.168821
Target:  5'- aCCGACGCugcaagaacugGGGCuACAGcgGCGCGGAu- -3'
miRNA:   3'- gGGUUGCG-----------CCCG-UGUCa-CGCGCCUug -5'
26756 3' -58.2 NC_005808.1 + 28754 0.69 0.338755
Target:  5'- gUCCAGCGCGGuGCGCuucucgGCGCGcacGGCg -3'
miRNA:   3'- -GGGUUGCGCC-CGUGuca---CGCGCc--UUG- -5'
26756 3' -58.2 NC_005808.1 + 29617 0.68 0.390227
Target:  5'- gUCCAGCGcCGGGCGCuuGUG-GCcGGGCu -3'
miRNA:   3'- -GGGUUGC-GCCCGUGu-CACgCGcCUUG- -5'
26756 3' -58.2 NC_005808.1 + 30447 0.72 0.220537
Target:  5'- cCCCGacgccuACGCGGaaGCGCAGcGCGUGGcGCg -3'
miRNA:   3'- -GGGU------UGCGCC--CGUGUCaCGCGCCuUG- -5'
26756 3' -58.2 NC_005808.1 + 31033 0.67 0.407559
Target:  5'- gCCGaggcaaucGCGCGGGC-CAacGUGCGCGaaggcccGAACa -3'
miRNA:   3'- gGGU--------UGCGCCCGuGU--CACGCGC-------CUUG- -5'
26756 3' -58.2 NC_005808.1 + 32058 0.66 0.476356
Target:  5'- aCCCGuuGCGCGuGGCgGCGGaaaGCGUGGccGGCg -3'
miRNA:   3'- -GGGU--UGCGC-CCG-UGUCa--CGCGCC--UUG- -5'
26756 3' -58.2 NC_005808.1 + 32586 0.7 0.299764
Target:  5'- aCCAGgGCGGGgGCcgGGcGCGCGGcACu -3'
miRNA:   3'- gGGUUgCGCCCgUG--UCaCGCGCCuUG- -5'
26756 3' -58.2 NC_005808.1 + 34371 0.71 0.251144
Target:  5'- gCCGACGaGGGCACGGccGCGCacGAACu -3'
miRNA:   3'- gGGUUGCgCCCGUGUCa-CGCGc-CUUG- -5'
26756 3' -58.2 NC_005808.1 + 34425 0.66 0.48651
Target:  5'- gCCGGCagcaucCGGGCGCAc-GCGCaGGGACg -3'
miRNA:   3'- gGGUUGc-----GCCCGUGUcaCGCG-CCUUG- -5'
26756 3' -58.2 NC_005808.1 + 35055 0.67 0.408484
Target:  5'- aCCCGGCcGCGaGC-CAGcGUGCGGAAg -3'
miRNA:   3'- -GGGUUG-CGCcCGuGUCaCGCGCCUUg -5'
26756 3' -58.2 NC_005808.1 + 36161 0.67 0.456371
Target:  5'- gCCuuCGCGGGCGguG-GUGuCGcGAGCg -3'
miRNA:   3'- gGGuuGCGCCCGUguCaCGC-GC-CUUG- -5'
26756 3' -58.2 NC_005808.1 + 36241 0.75 0.140905
Target:  5'- aCCCAGCGCcccggccuucgggccGGGCGCuuuGgcugGgGCGGAACg -3'
miRNA:   3'- -GGGUUGCG---------------CCCGUGu--Ca---CgCGCCUUG- -5'
26756 3' -58.2 NC_005808.1 + 37054 0.76 0.111503
Target:  5'- aCCGugGCGGGCGaccUGgGCGGAACc -3'
miRNA:   3'- gGGUugCGCCCGUgucACgCGCCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.