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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26756 | 3' | -58.2 | NC_005808.1 | + | 37392 | 0.74 | 0.143257 |
Target: 5'- cCUCGACGUGGGCACGGUaGC-CGGcAAUa -3' miRNA: 3'- -GGGUUGCGCCCGUGUCA-CGcGCC-UUG- -5' |
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26756 | 3' | -58.2 | NC_005808.1 | + | 37816 | 0.79 | 0.072802 |
Target: 5'- gCCGGCGUgcuGGGCGCAGUGUGgGcGAACg -3' miRNA: 3'- gGGUUGCG---CCCGUGUCACGCgC-CUUG- -5' |
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26756 | 3' | -58.2 | NC_005808.1 | + | 38383 | 0.71 | 0.251144 |
Target: 5'- -gCGACGauGGCACGGUGCGCGc--- -3' miRNA: 3'- ggGUUGCgcCCGUGUCACGCGCcuug -5' |
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26756 | 3' | -58.2 | NC_005808.1 | + | 38877 | 0.73 | 0.183079 |
Target: 5'- aCCGGCGUGaacGGCACGGgcgccacgagcGCGUGGAACa -3' miRNA: 3'- gGGUUGCGC---CCGUGUCa----------CGCGCCUUG- -5' |
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26756 | 3' | -58.2 | NC_005808.1 | + | 39025 | 0.7 | 0.280901 |
Target: 5'- aCCCGGCGCgucgcugaaauuuauGcGGCGCGGUugGCGGGACu -3' miRNA: 3'- -GGGUUGCG---------------C-CCGUGUCAcgCGCCUUG- -5' |
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26756 | 3' | -58.2 | NC_005808.1 | + | 39301 | 0.66 | 0.507117 |
Target: 5'- uCCCAuuGCGCaaagcaucccgaGGaaGCACGGcguUGCGCGGGAa -3' miRNA: 3'- -GGGU--UGCG------------CC--CGUGUC---ACGCGCCUUg -5' |
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26756 | 3' | -58.2 | NC_005808.1 | + | 40834 | 0.69 | 0.338755 |
Target: 5'- gCCCGACGCGccaGGCGCAG-GC-CGGccauGACc -3' miRNA: 3'- -GGGUUGCGC---CCGUGUCaCGcGCC----UUG- -5' |
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26756 | 3' | -58.2 | NC_005808.1 | + | 41304 | 0.68 | 0.372512 |
Target: 5'- gCCCuGgGCGcGGCGguGUGgGCGGGc- -3' miRNA: 3'- -GGGuUgCGC-CCGUguCACgCGCCUug -5' |
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26756 | 3' | -58.2 | NC_005808.1 | + | 41781 | 0.66 | 0.476356 |
Target: 5'- gCCGACGUucggcaagggcuGGGCGCGGcGCGUcgccGGAAa -3' miRNA: 3'- gGGUUGCG------------CCCGUGUCaCGCG----CCUUg -5' |
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26756 | 3' | -58.2 | NC_005808.1 | + | 42428 | 0.69 | 0.338755 |
Target: 5'- gCCCAGCGacaccgGGGCGCAuccgccUGCGgGGAAg -3' miRNA: 3'- -GGGUUGCg-----CCCGUGUc-----ACGCgCCUUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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