miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26756 3' -58.2 NC_005808.1 + 29617 0.68 0.390227
Target:  5'- gUCCAGCGcCGGGCGCuuGUG-GCcGGGCu -3'
miRNA:   3'- -GGGUUGC-GCCCGUGu-CACgCGcCUUG- -5'
26756 3' -58.2 NC_005808.1 + 28754 0.69 0.338755
Target:  5'- gUCCAGCGCGGuGCGCuucucgGCGCGcacGGCg -3'
miRNA:   3'- -GGGUUGCGCC-CGUGuca---CGCGCc--UUG- -5'
26756 3' -58.2 NC_005808.1 + 26987 0.73 0.168821
Target:  5'- aCCGACGCugcaagaacugGGGCuACAGcgGCGCGGAu- -3'
miRNA:   3'- gGGUUGCG-----------CCCG-UGUCa-CGCGCCUug -5'
26756 3' -58.2 NC_005808.1 + 25190 0.71 0.224623
Target:  5'- -gCGACGUGGGCgccgcugaaucgaaGCGGUGCGuCGGcGCg -3'
miRNA:   3'- ggGUUGCGCCCG--------------UGUCACGC-GCCuUG- -5'
26756 3' -58.2 NC_005808.1 + 25084 0.66 0.496765
Target:  5'- aCCCAGCGCaGcGCGCccgGCGCcguGGGAUa -3'
miRNA:   3'- -GGGUUGCGcC-CGUGucaCGCG---CCUUG- -5'
26756 3' -58.2 NC_005808.1 + 24063 0.66 0.476356
Target:  5'- uUCC-AUGCcGcGCACAGUagcggcgaccGCGCGGGGCa -3'
miRNA:   3'- -GGGuUGCGcC-CGUGUCA----------CGCGCCUUG- -5'
26756 3' -58.2 NC_005808.1 + 23716 0.73 0.168821
Target:  5'- gCCCAGguCGCGGGC-CAGUGCcucgGUGGcGCg -3'
miRNA:   3'- -GGGUU--GCGCCCGuGUCACG----CGCCuUG- -5'
26756 3' -58.2 NC_005808.1 + 22471 0.66 0.476356
Target:  5'- cCCCGAagGCGuGGCauucgacgACGGUGUGCuGGGCg -3'
miRNA:   3'- -GGGUUg-CGC-CCG--------UGUCACGCGcCUUG- -5'
26756 3' -58.2 NC_005808.1 + 21949 1.01 0.001661
Target:  5'- gCCCAACG-GGGCACAGUGCGCGGAACg -3'
miRNA:   3'- -GGGUUGCgCCCGUGUCACGCGCCUUG- -5'
26756 3' -58.2 NC_005808.1 + 18523 0.68 0.355351
Target:  5'- gCCCcGCGCGGucgccGCuACuGUGCGCGGcAUg -3'
miRNA:   3'- -GGGuUGCGCC-----CG-UGuCACGCGCCuUG- -5'
26756 3' -58.2 NC_005808.1 + 17870 0.66 0.507117
Target:  5'- gCC-GCGCaGGCGCGGUGgaaGCGGcccGACc -3'
miRNA:   3'- gGGuUGCGcCCGUGUCACg--CGCC---UUG- -5'
26756 3' -58.2 NC_005808.1 + 17509 0.73 0.188064
Target:  5'- uCCCAcgGCGcCGGGCGCGcUGCGCuGGGugGCg -3'
miRNA:   3'- -GGGU--UGC-GCCCGUGUcACGCG-CCU--UG- -5'
26756 3' -58.2 NC_005808.1 + 17347 0.66 0.506078
Target:  5'- -gCAGCGCGaGCAacaGGUGCGCuucgucaugggcuGGAACc -3'
miRNA:   3'- ggGUUGCGCcCGUg--UCACGCG-------------CCUUG- -5'
26756 3' -58.2 NC_005808.1 + 15162 0.71 0.251144
Target:  5'- gCCAGggccugcggcCGcCGGGCGCGGUGCGCcaGGcGCg -3'
miRNA:   3'- gGGUU----------GC-GCCCGUGUCACGCG--CCuUG- -5'
26756 3' -58.2 NC_005808.1 + 15122 0.69 0.32273
Target:  5'- aUCCu-CGCGuGGUGC-GUGCGCGGcGCg -3'
miRNA:   3'- -GGGuuGCGC-CCGUGuCACGCGCCuUG- -5'
26756 3' -58.2 NC_005808.1 + 14778 0.71 0.251144
Target:  5'- gCCAcCGCGGGCAgcGcGCGCGaGGACg -3'
miRNA:   3'- gGGUuGCGCCCGUguCaCGCGC-CUUG- -5'
26756 3' -58.2 NC_005808.1 + 14328 0.74 0.155564
Target:  5'- uCCCAGCGCGcGGuCAUGGUGCGC--AACa -3'
miRNA:   3'- -GGGUUGCGC-CC-GUGUCACGCGccUUG- -5'
26756 3' -58.2 NC_005808.1 + 11588 0.71 0.242864
Target:  5'- gCCCAGggccgccggcuggcCGcCGGGCAgCAGUGCcaGCGGAAg -3'
miRNA:   3'- -GGGUU--------------GC-GCCCGU-GUCACG--CGCCUUg -5'
26756 3' -58.2 NC_005808.1 + 9995 0.66 0.504002
Target:  5'- gCCCuuGACGCGGGCcagcuuggucACAGcgucgGCGguguccugauacguCGGAGCg -3'
miRNA:   3'- -GGG--UUGCGCCCG----------UGUCa----CGC--------------GCCUUG- -5'
26756 3' -58.2 NC_005808.1 + 8841 0.67 0.417811
Target:  5'- gCCgCAACGCGGGC-CAGcGCGuUGGc-- -3'
miRNA:   3'- -GG-GUUGCGCCCGuGUCaCGC-GCCuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.