miRNA display CGI


Results 21 - 40 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26756 3' -58.2 NC_005808.1 + 15122 0.69 0.32273
Target:  5'- aUCCu-CGCGuGGUGC-GUGCGCGGcGCg -3'
miRNA:   3'- -GGGuuGCGC-CCGUGuCACGCGCCuUG- -5'
26756 3' -58.2 NC_005808.1 + 42428 0.69 0.338755
Target:  5'- gCCCAGCGacaccgGGGCGCAuccgccUGCGgGGAAg -3'
miRNA:   3'- -GGGUUGCg-----CCCGUGUc-----ACGCgCCUUg -5'
26756 3' -58.2 NC_005808.1 + 18523 0.68 0.355351
Target:  5'- gCCCcGCGCGGucgccGCuACuGUGCGCGGcAUg -3'
miRNA:   3'- -GGGuUGCGCC-----CG-UGuCACGCGCCuUG- -5'
26756 3' -58.2 NC_005808.1 + 41304 0.68 0.372512
Target:  5'- gCCCuGgGCGcGGCGguGUGgGCGGGc- -3'
miRNA:   3'- -GGGuUgCGC-CCGUguCACgCGCCUug -5'
26756 3' -58.2 NC_005808.1 + 8560 0.68 0.399289
Target:  5'- gCCgAugGCGGGCagcgACAG-GCGCGacACg -3'
miRNA:   3'- -GGgUugCGCCCG----UGUCaCGCGCcuUG- -5'
26756 3' -58.2 NC_005808.1 + 35055 0.67 0.408484
Target:  5'- aCCCGGCcGCGaGC-CAGcGUGCGGAAg -3'
miRNA:   3'- -GGGUUG-CGCcCGuGUCaCGCGCCUUg -5'
26756 3' -58.2 NC_005808.1 + 7378 0.66 0.476356
Target:  5'- gUCCAGCgGCGGGCAC----CGCGGcGACc -3'
miRNA:   3'- -GGGUUG-CGCCCGUGucacGCGCC-UUG- -5'
26756 3' -58.2 NC_005808.1 + 22471 0.66 0.476356
Target:  5'- cCCCGAagGCGuGGCauucgacgACGGUGUGCuGGGCg -3'
miRNA:   3'- -GGGUUg-CGC-CCG--------UGUCACGCGcCUUG- -5'
26756 3' -58.2 NC_005808.1 + 15162 0.71 0.251144
Target:  5'- gCCAGggccugcggcCGcCGGGCGCGGUGCGCcaGGcGCg -3'
miRNA:   3'- gGGUU----------GC-GCCCGUGUCACGCG--CCuUG- -5'
26756 3' -58.2 NC_005808.1 + 14778 0.71 0.251144
Target:  5'- gCCAcCGCGGGCAgcGcGCGCGaGGACg -3'
miRNA:   3'- gGGUuGCGCCCGUguCaCGCGC-CUUG- -5'
26756 3' -58.2 NC_005808.1 + 634 0.71 0.23238
Target:  5'- cCUCGGCGCGGGUgaACGGgucagGCG-GGGGCu -3'
miRNA:   3'- -GGGUUGCGCCCG--UGUCa----CGCgCCUUG- -5'
26756 3' -58.2 NC_005808.1 + 37054 0.76 0.111503
Target:  5'- aCCGugGCGGGCGaccUGgGCGGAACc -3'
miRNA:   3'- gGGUugCGCCCGUgucACgCGCCUUG- -5'
26756 3' -58.2 NC_005808.1 + 37392 0.74 0.143257
Target:  5'- cCUCGACGUGGGCACGGUaGC-CGGcAAUa -3'
miRNA:   3'- -GGGUUGCGCCCGUGUCA-CGcGCC-UUG- -5'
26756 3' -58.2 NC_005808.1 + 14328 0.74 0.155564
Target:  5'- uCCCAGCGCGcGGuCAUGGUGCGC--AACa -3'
miRNA:   3'- -GGGUUGCGC-CC-GUGUCACGCGccUUG- -5'
26756 3' -58.2 NC_005808.1 + 38877 0.73 0.183079
Target:  5'- aCCGGCGUGaacGGCACGGgcgccacgagcGCGUGGAACa -3'
miRNA:   3'- gGGUUGCGC---CCGUGUCa----------CGCGCCUUG- -5'
26756 3' -58.2 NC_005808.1 + 17509 0.73 0.188064
Target:  5'- uCCCAcgGCGcCGGGCGCGcUGCGCuGGGugGCg -3'
miRNA:   3'- -GGGU--UGC-GCCCGUGUcACGCG-CCU--UG- -5'
26756 3' -58.2 NC_005808.1 + 6619 0.73 0.188064
Target:  5'- aCCAgcggGCGCGuGGCGCuGcGCGCGGAcACg -3'
miRNA:   3'- gGGU----UGCGC-CCGUGuCaCGCGCCU-UG- -5'
26756 3' -58.2 NC_005808.1 + 5747 0.72 0.21481
Target:  5'- gCCCAGCGCgccGGGCAgCgAGUGCGCcaGGGCc -3'
miRNA:   3'- -GGGUUGCG---CCCGU-G-UCACGCGc-CUUG- -5'
26756 3' -58.2 NC_005808.1 + 30447 0.72 0.220537
Target:  5'- cCCCGacgccuACGCGGaaGCGCAGcGCGUGGcGCg -3'
miRNA:   3'- -GGGU------UGCGCC--CGUGUCaCGCGCCuUG- -5'
26756 3' -58.2 NC_005808.1 + 25190 0.71 0.224623
Target:  5'- -gCGACGUGGGCgccgcugaaucgaaGCGGUGCGuCGGcGCg -3'
miRNA:   3'- ggGUUGCGCCCG--------------UGUCACGC-GCCuUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.