Results 21 - 40 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26756 | 3' | -58.2 | NC_005808.1 | + | 37054 | 0.76 | 0.111503 |
Target: 5'- aCCGugGCGGGCGaccUGgGCGGAACc -3' miRNA: 3'- gGGUugCGCCCGUgucACgCGCCUUG- -5' |
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26756 | 3' | -58.2 | NC_005808.1 | + | 41781 | 0.66 | 0.476356 |
Target: 5'- gCCGACGUucggcaagggcuGGGCGCGGcGCGUcgccGGAAa -3' miRNA: 3'- gGGUUGCG------------CCCGUGUCaCGCG----CCUUg -5' |
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26756 | 3' | -58.2 | NC_005808.1 | + | 34425 | 0.66 | 0.48651 |
Target: 5'- gCCGGCagcaucCGGGCGCAc-GCGCaGGGACg -3' miRNA: 3'- gGGUUGc-----GCCCGUGUcaCGCG-CCUUG- -5' |
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26756 | 3' | -58.2 | NC_005808.1 | + | 17870 | 0.66 | 0.507117 |
Target: 5'- gCC-GCGCaGGCGCGGUGgaaGCGGcccGACc -3' miRNA: 3'- gGGuUGCGcCCGUGUCACg--CGCC---UUG- -5' |
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26756 | 3' | -58.2 | NC_005808.1 | + | 18523 | 0.68 | 0.355351 |
Target: 5'- gCCCcGCGCGGucgccGCuACuGUGCGCGGcAUg -3' miRNA: 3'- -GGGuUGCGCC-----CG-UGuCACGCGCCuUG- -5' |
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26756 | 3' | -58.2 | NC_005808.1 | + | 9995 | 0.66 | 0.504002 |
Target: 5'- gCCCuuGACGCGGGCcagcuuggucACAGcgucgGCGguguccugauacguCGGAGCg -3' miRNA: 3'- -GGG--UUGCGCCCG----------UGUCa----CGC--------------GCCUUG- -5' |
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26756 | 3' | -58.2 | NC_005808.1 | + | 39301 | 0.66 | 0.507117 |
Target: 5'- uCCCAuuGCGCaaagcaucccgaGGaaGCACGGcguUGCGCGGGAa -3' miRNA: 3'- -GGGU--UGCG------------CC--CGUGUC---ACGCGCCUUg -5' |
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26756 | 3' | -58.2 | NC_005808.1 | + | 32058 | 0.66 | 0.476356 |
Target: 5'- aCCCGuuGCGCGuGGCgGCGGaaaGCGUGGccGGCg -3' miRNA: 3'- -GGGU--UGCGC-CCG-UGUCa--CGCGCC--UUG- -5' |
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26756 | 3' | -58.2 | NC_005808.1 | + | 17347 | 0.66 | 0.506078 |
Target: 5'- -gCAGCGCGaGCAacaGGUGCGCuucgucaugggcuGGAACc -3' miRNA: 3'- ggGUUGCGCcCGUg--UCACGCG-------------CCUUG- -5' |
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26756 | 3' | -58.2 | NC_005808.1 | + | 37816 | 0.79 | 0.072802 |
Target: 5'- gCCGGCGUgcuGGGCGCAGUGUGgGcGAACg -3' miRNA: 3'- gGGUUGCG---CCCGUGUCACGCgC-CUUG- -5' |
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26756 | 3' | -58.2 | NC_005808.1 | + | 5861 | 0.66 | 0.507117 |
Target: 5'- gCUAuUGUGGGCGCAGaGCGCGa--- -3' miRNA: 3'- gGGUuGCGCCCGUGUCaCGCGCcuug -5' |
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26756 | 3' | -58.2 | NC_005808.1 | + | 1877 | 0.66 | 0.507117 |
Target: 5'- gCCCGugGCcGGCGCuggccgGGUGgGC-GAACa -3' miRNA: 3'- -GGGUugCGcCCGUG------UCACgCGcCUUG- -5' |
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26756 | 3' | -58.2 | NC_005808.1 | + | 23716 | 0.73 | 0.168821 |
Target: 5'- gCCCAGguCGCGGGC-CAGUGCcucgGUGGcGCg -3' miRNA: 3'- -GGGUU--GCGCCCGuGUCACG----CGCCuUG- -5' |
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26756 | 3' | -58.2 | NC_005808.1 | + | 34371 | 0.71 | 0.251144 |
Target: 5'- gCCGACGaGGGCACGGccGCGCacGAACu -3' miRNA: 3'- gGGUUGCgCCCGUGUCa-CGCGc-CUUG- -5' |
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26756 | 3' | -58.2 | NC_005808.1 | + | 29617 | 0.68 | 0.390227 |
Target: 5'- gUCCAGCGcCGGGCGCuuGUG-GCcGGGCu -3' miRNA: 3'- -GGGUUGC-GCCCGUGu-CACgCGcCUUG- -5' |
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26756 | 3' | -58.2 | NC_005808.1 | + | 4037 | 0.7 | 0.278084 |
Target: 5'- gCC-GCGCGGGUcgagcGCAGccGgGCGGAACu -3' miRNA: 3'- gGGuUGCGCCCG-----UGUCa-CgCGCCUUG- -5' |
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26756 | 3' | -58.2 | NC_005808.1 | + | 3741 | 0.67 | 0.427266 |
Target: 5'- gCCgGugGUGGGCACgucGGUGCcgccGCuGGACg -3' miRNA: 3'- -GGgUugCGCCCGUG---UCACG----CGcCUUG- -5' |
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26756 | 3' | -58.2 | NC_005808.1 | + | 8841 | 0.67 | 0.417811 |
Target: 5'- gCCgCAACGCGGGC-CAGcGCGuUGGc-- -3' miRNA: 3'- -GG-GUUGCGCCCGuGUCaCGC-GCCuug -5' |
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26756 | 3' | -58.2 | NC_005808.1 | + | 31033 | 0.67 | 0.407559 |
Target: 5'- gCCGaggcaaucGCGCGGGC-CAacGUGCGCGaaggcccGAACa -3' miRNA: 3'- gGGU--------UGCGCCCGuGU--CACGCGC-------CUUG- -5' |
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26756 | 3' | -58.2 | NC_005808.1 | + | 462 | 0.69 | 0.346982 |
Target: 5'- gCCAGCuuGCGGGCGCuGU-CGCGGu-- -3' miRNA: 3'- gGGUUG--CGCCCGUGuCAcGCGCCuug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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