miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26757 5' -57.4 NC_005808.1 + 17438 0.66 0.567097
Target:  5'- aGCAGUggccCCGCcAGCaucgaggccagGUGCCacgCCAGGg -3'
miRNA:   3'- -CGUCAa---GGCGcUCG-----------CGCGGaa-GGUCC- -5'
26757 5' -57.4 NC_005808.1 + 13125 0.66 0.556301
Target:  5'- cGCGGaacuggCCGCGcGCuucguCGCCUggugCCAGGa -3'
miRNA:   3'- -CGUCaa----GGCGCuCGc----GCGGAa---GGUCC- -5'
26757 5' -57.4 NC_005808.1 + 35496 0.66 0.556301
Target:  5'- cGCAGUccaucgugCgCGUGGGCGCGCCgugggUAGGc -3'
miRNA:   3'- -CGUCAa-------G-GCGCUCGCGCGGaag--GUCC- -5'
26757 5' -57.4 NC_005808.1 + 14812 0.66 0.545567
Target:  5'- uGCAccUCgGCG-GCGCuGCCUUcgcCCAGGu -3'
miRNA:   3'- -CGUcaAGgCGCuCGCG-CGGAA---GGUCC- -5'
26757 5' -57.4 NC_005808.1 + 34423 0.66 0.545567
Target:  5'- gGCAGga-CGCca--GCGCCUUCCuGGg -3'
miRNA:   3'- -CGUCaagGCGcucgCGCGGAAGGuCC- -5'
26757 5' -57.4 NC_005808.1 + 28642 0.66 0.545567
Target:  5'- cCAGUUCCGCGcGCaGUGCCagaucggugCCGGcGg -3'
miRNA:   3'- cGUCAAGGCGCuCG-CGCGGaa-------GGUC-C- -5'
26757 5' -57.4 NC_005808.1 + 21420 0.66 0.534899
Target:  5'- aGCAGcaggCCGCGcAGCaggccGCGCUguugaaCCAGGg -3'
miRNA:   3'- -CGUCaa--GGCGC-UCG-----CGCGGaa----GGUCC- -5'
26757 5' -57.4 NC_005808.1 + 32807 0.66 0.513794
Target:  5'- -uGGUUCgGCGuGCGCGaCCUggccgCguGGa -3'
miRNA:   3'- cgUCAAGgCGCuCGCGC-GGAa----GguCC- -5'
26757 5' -57.4 NC_005808.1 + 15084 0.67 0.494066
Target:  5'- uGCAGgcugcuuugCUGCGAccGCGCGCCguaauagcugccuaCCAGGc -3'
miRNA:   3'- -CGUCaa-------GGCGCU--CGCGCGGaa------------GGUCC- -5'
26757 5' -57.4 NC_005808.1 + 15171 0.67 0.493037
Target:  5'- uGCGG--CCGcCGGGCGCGgUgcgCCAGGc -3'
miRNA:   3'- -CGUCaaGGC-GCUCGCGCgGaa-GGUCC- -5'
26757 5' -57.4 NC_005808.1 + 18695 0.67 0.493037
Target:  5'- gGCAuGgaagCCGCGGGCgugGCGCaCUUCCuuGGc -3'
miRNA:   3'- -CGU-Caa--GGCGCUCG---CGCG-GAAGGu-CC- -5'
26757 5' -57.4 NC_005808.1 + 21720 0.67 0.49201
Target:  5'- uCGGUUCCGUGGucgaaaucacggcGCGCGCCgucgUgCAGu -3'
miRNA:   3'- cGUCAAGGCGCU-------------CGCGCGGa---AgGUCc -5'
26757 5' -57.4 NC_005808.1 + 18444 0.67 0.482804
Target:  5'- cGCAG--CCGuCGAG-GCGCUgggCCAGGc -3'
miRNA:   3'- -CGUCaaGGC-GCUCgCGCGGaa-GGUCC- -5'
26757 5' -57.4 NC_005808.1 + 15509 0.67 0.476713
Target:  5'- uGCAGUUCUGCGgugaugGGCaggccgauaugcacgGUGCCggccuccacgUCCAGGu -3'
miRNA:   3'- -CGUCAAGGCGC------UCG---------------CGCGGa---------AGGUCC- -5'
26757 5' -57.4 NC_005808.1 + 22387 0.67 0.462652
Target:  5'- aCAGccggCCGCGGGCGCuGCCaagaCCgAGGg -3'
miRNA:   3'- cGUCaa--GGCGCUCGCG-CGGaa--GG-UCC- -5'
26757 5' -57.4 NC_005808.1 + 41557 0.67 0.462652
Target:  5'- cGCGGcgacaugcugCCGCcGGcCGUgGCCUUCCAGGu -3'
miRNA:   3'- -CGUCaa--------GGCGcUC-GCG-CGGAAGGUCC- -5'
26757 5' -57.4 NC_005808.1 + 24025 0.68 0.423732
Target:  5'- cCAGgccgucaCCGCGAGCGCGgCCU-CCAc- -3'
miRNA:   3'- cGUCaa-----GGCGCUCGCGC-GGAaGGUcc -5'
26757 5' -57.4 NC_005808.1 + 19493 0.69 0.386839
Target:  5'- cGCuGUcgCCGUGGGCGCcGCCguuggcgUCGGGg -3'
miRNA:   3'- -CGuCAa-GGCGCUCGCG-CGGaa-----GGUCC- -5'
26757 5' -57.4 NC_005808.1 + 28177 0.69 0.352126
Target:  5'- aCGGUgCCGCaGGCGCGCCUggcgacgcCCAGc -3'
miRNA:   3'- cGUCAaGGCGcUCGCGCGGAa-------GGUCc -5'
26757 5' -57.4 NC_005808.1 + 26233 0.7 0.3438
Target:  5'- cGCAGUUuuGCGcGCGuCGCCgaaggCaCGGGc -3'
miRNA:   3'- -CGUCAAggCGCuCGC-GCGGaa---G-GUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.