Results 21 - 29 of 29 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 26757 | 5' | -57.4 | NC_005808.1 | + | 28177 | 0.69 | 0.352126 |
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Target: 5'- aCGGUgCCGCaGGCGCGCCUggcgacgcCCAGc -3' miRNA: 3'- cGUCAaGGCGcUCGCGCGGAa-------GGUCc -5' |
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| 26757 | 5' | -57.4 | NC_005808.1 | + | 28223 | 0.8 | 0.065888 |
|
Target: 5'- --cGUUCCGCG-GCGCggaugcccccGCCUUCCAGGa -3' miRNA: 3'- cguCAAGGCGCuCGCG----------CGGAAGGUCC- -5' |
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| 26757 | 5' | -57.4 | NC_005808.1 | + | 28642 | 0.66 | 0.545567 |
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Target: 5'- cCAGUUCCGCGcGCaGUGCCagaucggugCCGGcGg -3' miRNA: 3'- cGUCAAGGCGCuCG-CGCGGaa-------GGUC-C- -5' |
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| 26757 | 5' | -57.4 | NC_005808.1 | + | 32807 | 0.66 | 0.513794 |
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Target: 5'- -uGGUUCgGCGuGCGCGaCCUggccgCguGGa -3' miRNA: 3'- cgUCAAGgCGCuCGCGC-GGAa----GguCC- -5' |
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| 26757 | 5' | -57.4 | NC_005808.1 | + | 34423 | 0.66 | 0.545567 |
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Target: 5'- gGCAGga-CGCca--GCGCCUUCCuGGg -3' miRNA: 3'- -CGUCaagGCGcucgCGCGGAAGGuCC- -5' |
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| 26757 | 5' | -57.4 | NC_005808.1 | + | 35496 | 0.66 | 0.556301 |
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Target: 5'- cGCAGUccaucgugCgCGUGGGCGCGCCgugggUAGGc -3' miRNA: 3'- -CGUCAa-------G-GCGCUCGCGCGGaag--GUCC- -5' |
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| 26757 | 5' | -57.4 | NC_005808.1 | + | 36138 | 0.79 | 0.07393 |
|
Target: 5'- uGCAGUUCCuGCGcgacGGCGaCGCCUUCgCGGGc -3' miRNA: 3'- -CGUCAAGG-CGC----UCGC-GCGGAAG-GUCC- -5' |
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| 26757 | 5' | -57.4 | NC_005808.1 | + | 41557 | 0.67 | 0.462652 |
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Target: 5'- cGCGGcgacaugcugCCGCcGGcCGUgGCCUUCCAGGu -3' miRNA: 3'- -CGUCaa--------GGCGcUC-GCG-CGGAAGGUCC- -5' |
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| 26757 | 5' | -57.4 | NC_005808.1 | + | 42284 | 0.71 | 0.29982 |
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Target: 5'- cCGGUaCgGCacgcccuggacggaaGAGCGCGCCUUCCGGc -3' miRNA: 3'- cGUCAaGgCG---------------CUCGCGCGGAAGGUCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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