Results 61 - 66 of 66 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
|
P value |
| Predicted miRNA align pattern | |||||||
| 26758 | 3' | -54.2 | NC_005808.1 | + | 15099 | 0.76 | 0.201302 |
|
Target: 5'- aGCuGGCGGccgAGgCCGCCGGcaUCCUCGCg -3' miRNA: 3'- -CGuCCGCU---UUgGGUGGUCa-AGGAGCG- -5' |
|||||||
| 26758 | 3' | -54.2 | NC_005808.1 | + | 33483 | 0.77 | 0.175434 |
|
Target: 5'- cGCuaucuGGCGAuaccuGCCCACCGGcaagaacggCCUCGCg -3' miRNA: 3'- -CGu----CCGCUu----UGGGUGGUCaa-------GGAGCG- -5' |
|||||||
| 26758 | 3' | -54.2 | NC_005808.1 | + | 4372 | 0.78 | 0.165942 |
|
Target: 5'- gGCAGGCGGAugCgcaGCCAGgcgCCgUCGCg -3' miRNA: 3'- -CGUCCGCUUugGg--UGGUCaa-GG-AGCG- -5' |
|||||||
| 26758 | 3' | -54.2 | NC_005808.1 | + | 25141 | 0.79 | 0.132438 |
|
Target: 5'- -gGGGCGAagaagucgauAACCCACCGGc-CCUCGCu -3' miRNA: 3'- cgUCCGCU----------UUGGGUGGUCaaGGAGCG- -5' |
|||||||
| 26758 | 3' | -54.2 | NC_005808.1 | + | 28627 | 0.81 | 0.102266 |
|
Target: 5'- cGCGGaUGAGGCCgGCCAGUUCCgcgCGCa -3' miRNA: 3'- -CGUCcGCUUUGGgUGGUCAAGGa--GCG- -5' |
|||||||
| 26758 | 3' | -54.2 | NC_005808.1 | + | 23856 | 1.13 | 0.000527 |
|
Target: 5'- gGCAGGCGAAACCCACCAGUUCCUCGCc -3' miRNA: 3'- -CGUCCGCUUUGGGUGGUCAAGGAGCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home