Results 61 - 66 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
26758 | 3' | -54.2 | NC_005808.1 | + | 10397 | 0.66 | 0.712415 |
Target: 5'- cCGGGUGAugcAGCgCGCCGauggCCUCGCc -3' miRNA: 3'- cGUCCGCU---UUGgGUGGUcaa-GGAGCG- -5' |
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26758 | 3' | -54.2 | NC_005808.1 | + | 27592 | 0.66 | 0.712415 |
Target: 5'- aGCAGGCGgcGCCagaugGCguGgUCgUCGCc -3' miRNA: 3'- -CGUCCGCuuUGGg----UGguCaAGgAGCG- -5' |
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26758 | 3' | -54.2 | NC_005808.1 | + | 24338 | 0.66 | 0.705824 |
Target: 5'- gGCAGaGCGAuGCCCGuguuguuggucggguCgAGggCUUCGCg -3' miRNA: 3'- -CGUC-CGCUuUGGGU---------------GgUCaaGGAGCG- -5' |
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26758 | 3' | -54.2 | NC_005808.1 | + | 35350 | 0.66 | 0.701414 |
Target: 5'- gGCcGGCGAcaucGGCCCgcGCCAGUggCCgaagUUGCa -3' miRNA: 3'- -CGuCCGCU----UUGGG--UGGUCAa-GG----AGCG- -5' |
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26758 | 3' | -54.2 | NC_005808.1 | + | 1761 | 0.66 | 0.690343 |
Target: 5'- aCAGGCG-AugCCAUauuGUUCCUC-Ca -3' miRNA: 3'- cGUCCGCuUugGGUGgu-CAAGGAGcG- -5' |
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26758 | 3' | -54.2 | NC_005808.1 | + | 28192 | 0.66 | 0.723334 |
Target: 5'- cGCcuGGCGAcGCCCagcuucgcuacGCCuacGUUCCgcggCGCg -3' miRNA: 3'- -CGu-CCGCUuUGGG-----------UGGu--CAAGGa---GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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