Results 61 - 66 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26758 | 3' | -54.2 | NC_005808.1 | + | 26061 | 0.66 | 0.721158 |
Target: 5'- aGCaAGGCGGccuguacGGCuauaucggccagaCCACCGGcaCCUCGCu -3' miRNA: 3'- -CG-UCCGCU-------UUG-------------GGUGGUCaaGGAGCG- -5' |
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26758 | 3' | -54.2 | NC_005808.1 | + | 6387 | 0.66 | 0.722246 |
Target: 5'- uCAGGCGcAGGCCgGCCGGc-CCgguguagUCGCg -3' miRNA: 3'- cGUCCGC-UUUGGgUGGUCaaGG-------AGCG- -5' |
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26758 | 3' | -54.2 | NC_005808.1 | + | 30404 | 0.66 | 0.723334 |
Target: 5'- gGCAGGC--AGCgCggGCCGGUuucgUUCUCGCa -3' miRNA: 3'- -CGUCCGcuUUGgG--UGGUCA----AGGAGCG- -5' |
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26758 | 3' | -54.2 | NC_005808.1 | + | 33866 | 0.66 | 0.723334 |
Target: 5'- gGUAGcGCcgcGCCCGCCGGgcacaUCUUCGUg -3' miRNA: 3'- -CGUC-CGcuuUGGGUGGUCa----AGGAGCG- -5' |
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26758 | 3' | -54.2 | NC_005808.1 | + | 2515 | 0.66 | 0.723334 |
Target: 5'- uUAGGCGggGCUUcgguucguagACCAGgaaUUCGCg -3' miRNA: 3'- cGUCCGCuuUGGG----------UGGUCaagGAGCG- -5' |
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26758 | 3' | -54.2 | NC_005808.1 | + | 28192 | 0.66 | 0.723334 |
Target: 5'- cGCcuGGCGAcGCCCagcuucgcuacGCCuacGUUCCgcggCGCg -3' miRNA: 3'- -CGu-CCGCUuUGGG-----------UGGu--CAAGGa---GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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