miRNA display CGI


Results 41 - 60 of 66 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26758 3' -54.2 NC_005808.1 + 26061 0.66 0.721158
Target:  5'- aGCaAGGCGGccuguacGGCuauaucggccagaCCACCGGcaCCUCGCu -3'
miRNA:   3'- -CG-UCCGCU-------UUG-------------GGUGGUCaaGGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 26260 0.66 0.690343
Target:  5'- aCGGGC---ACCCGCCGGccuggUCggCUCGCg -3'
miRNA:   3'- cGUCCGcuuUGGGUGGUCa----AG--GAGCG- -5'
26758 3' -54.2 NC_005808.1 + 27592 0.66 0.712415
Target:  5'- aGCAGGCGgcGCCagaugGCguGgUCgUCGCc -3'
miRNA:   3'- -CGUCCGCuuUGGg----UGguCaAGgAGCG- -5'
26758 3' -54.2 NC_005808.1 + 28192 0.66 0.723334
Target:  5'- cGCcuGGCGAcGCCCagcuucgcuacGCCuacGUUCCgcggCGCg -3'
miRNA:   3'- -CGu-CCGCUuUGGG-----------UGGu--CAAGGa---GCG- -5'
26758 3' -54.2 NC_005808.1 + 28627 0.81 0.102266
Target:  5'- cGCGGaUGAGGCCgGCCAGUUCCgcgCGCa -3'
miRNA:   3'- -CGUCcGCUUUGGgUGGUCAAGGa--GCG- -5'
26758 3' -54.2 NC_005808.1 + 29040 0.72 0.356303
Target:  5'- cCAGGuCGAuACCCACCGGcggCUCGUa -3'
miRNA:   3'- cGUCC-GCUuUGGGUGGUCaagGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 29330 0.71 0.410961
Target:  5'- cGguGGCGGucGCCgGCCAagUCCUCGa -3'
miRNA:   3'- -CguCCGCUu-UGGgUGGUcaAGGAGCg -5'
26758 3' -54.2 NC_005808.1 + 29467 0.69 0.501913
Target:  5'- cCAGGCGAcgaAGCgCgcgGCCAGUUCCgCGUc -3'
miRNA:   3'- cGUCCGCU---UUGgG---UGGUCAAGGaGCG- -5'
26758 3' -54.2 NC_005808.1 + 29619 0.68 0.567155
Target:  5'- gGCGGGCGGuuuucggaaCUGCCGGUgUCCauUCGCg -3'
miRNA:   3'- -CGUCCGCUuug------GGUGGUCA-AGG--AGCG- -5'
26758 3' -54.2 NC_005808.1 + 30404 0.66 0.723334
Target:  5'- gGCAGGC--AGCgCggGCCGGUuucgUUCUCGCa -3'
miRNA:   3'- -CGUCCGcuUUGgG--UGGUCA----AGGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 30424 0.68 0.567155
Target:  5'- gGCAuGGCGAugAGCgCgGgCAGggCCUCGCc -3'
miRNA:   3'- -CGU-CCGCU--UUG-GgUgGUCaaGGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 31099 0.67 0.668036
Target:  5'- cGCAGGCGcuGCCCuuugCGGUg--UCGCa -3'
miRNA:   3'- -CGUCCGCuuUGGGug--GUCAaggAGCG- -5'
26758 3' -54.2 NC_005808.1 + 31453 0.69 0.522258
Target:  5'- cGCAGGCG--GCCCAgCAGcaggCCgaacugcUCGCa -3'
miRNA:   3'- -CGUCCGCuuUGGGUgGUCaa--GG-------AGCG- -5'
26758 3' -54.2 NC_005808.1 + 31817 0.69 0.534182
Target:  5'- -aAGGCGAAGCCCAUgAa--CCUgCGCa -3'
miRNA:   3'- cgUCCGCUUUGGGUGgUcaaGGA-GCG- -5'
26758 3' -54.2 NC_005808.1 + 32778 0.7 0.460288
Target:  5'- gGC-GGCGAAGUCCGCCcucGGcaCCUCGCu -3'
miRNA:   3'- -CGuCCGCUUUGGGUGG---UCaaGGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 32852 0.71 0.440172
Target:  5'- -gAGGCGAAgcgcGCCCACCacgagcAGUUCgCcCGCg -3'
miRNA:   3'- cgUCCGCUU----UGGGUGG------UCAAG-GaGCG- -5'
26758 3' -54.2 NC_005808.1 + 33483 0.77 0.175434
Target:  5'- cGCuaucuGGCGAuaccuGCCCACCGGcaagaacggCCUCGCg -3'
miRNA:   3'- -CGu----CCGCUu----UGGGUGGUCaa-------GGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 33866 0.66 0.723334
Target:  5'- gGUAGcGCcgcGCCCGCCGGgcacaUCUUCGUg -3'
miRNA:   3'- -CGUC-CGcuuUGGGUGGUCa----AGGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 34752 0.67 0.623088
Target:  5'- ---cGCGAAGCCCGCCuca-CCaUCGCg -3'
miRNA:   3'- cgucCGCUUUGGGUGGucaaGG-AGCG- -5'
26758 3' -54.2 NC_005808.1 + 35350 0.66 0.701414
Target:  5'- gGCcGGCGAcaucGGCCCgcGCCAGUggCCgaagUUGCa -3'
miRNA:   3'- -CGuCCGCU----UUGGG--UGGUCAa-GG----AGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.