miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26758 3' -54.2 NC_005808.1 + 29040 0.72 0.356303
Target:  5'- cCAGGuCGAuACCCACCGGcggCUCGUa -3'
miRNA:   3'- cGUCC-GCUuUGGGUGGUCaagGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 28627 0.81 0.102266
Target:  5'- cGCGGaUGAGGCCgGCCAGUUCCgcgCGCa -3'
miRNA:   3'- -CGUCcGCUUUGGgUGGUCAAGGa--GCG- -5'
26758 3' -54.2 NC_005808.1 + 28192 0.66 0.723334
Target:  5'- cGCcuGGCGAcGCCCagcuucgcuacGCCuacGUUCCgcggCGCg -3'
miRNA:   3'- -CGu-CCGCUuUGGG-----------UGGu--CAAGGa---GCG- -5'
26758 3' -54.2 NC_005808.1 + 27592 0.66 0.712415
Target:  5'- aGCAGGCGgcGCCagaugGCguGgUCgUCGCc -3'
miRNA:   3'- -CGUCCGCuuUGGg----UGguCaAGgAGCG- -5'
26758 3' -54.2 NC_005808.1 + 26260 0.66 0.690343
Target:  5'- aCGGGC---ACCCGCCGGccuggUCggCUCGCg -3'
miRNA:   3'- cGUCCGcuuUGGGUGGUCa----AG--GAGCG- -5'
26758 3' -54.2 NC_005808.1 + 26061 0.66 0.721158
Target:  5'- aGCaAGGCGGccuguacGGCuauaucggccagaCCACCGGcaCCUCGCu -3'
miRNA:   3'- -CG-UCCGCU-------UUG-------------GGUGGUCaaGGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 25141 0.79 0.132438
Target:  5'- -gGGGCGAagaagucgauAACCCACCGGc-CCUCGCu -3'
miRNA:   3'- cgUCCGCU----------UUGGGUGGUCaaGGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 24765 0.74 0.263019
Target:  5'- cGguGGCGGgcaucAACCCGCCcgagGGUUCCgUGCa -3'
miRNA:   3'- -CguCCGCU-----UUGGGUGG----UCAAGGaGCG- -5'
26758 3' -54.2 NC_005808.1 + 24565 0.68 0.597259
Target:  5'- gGCGauGGCGAGGCCgGCCAcggucgggccguccGgcgugUCCUUGCc -3'
miRNA:   3'- -CGU--CCGCUUUGGgUGGU--------------Ca----AGGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 24338 0.66 0.705824
Target:  5'- gGCAGaGCGAuGCCCGuguuguuggucggguCgAGggCUUCGCg -3'
miRNA:   3'- -CGUC-CGCUuUGGGU---------------GgUCaaGGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 23856 1.13 0.000527
Target:  5'- gGCAGGCGAAACCCACCAGUUCCUCGCc -3'
miRNA:   3'- -CGUCCGCUUUGGGUGGUCAAGGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 23111 0.71 0.392169
Target:  5'- cGCA-GCGGccuGCCCACCGGcaCCUgGCg -3'
miRNA:   3'- -CGUcCGCUu--UGGGUGGUCaaGGAgCG- -5'
26758 3' -54.2 NC_005808.1 + 22492 0.68 0.578267
Target:  5'- gGCGGGCuGGGcuggucauGCCCGCCAucaUCCcCGCa -3'
miRNA:   3'- -CGUCCG-CUU--------UGGGUGGUca-AGGaGCG- -5'
26758 3' -54.2 NC_005808.1 + 20960 0.71 0.439179
Target:  5'- -aAGGCGAGuuucuacGCCgACCuGUUCCUCa- -3'
miRNA:   3'- cgUCCGCUU-------UGGgUGGuCAAGGAGcg -5'
26758 3' -54.2 NC_005808.1 + 19111 0.69 0.545104
Target:  5'- cGCAGGuCGAGauucccacgGCgCACCuGUUCCaCGCc -3'
miRNA:   3'- -CGUCC-GCUU---------UGgGUGGuCAAGGaGCG- -5'
26758 3' -54.2 NC_005808.1 + 19052 0.68 0.578267
Target:  5'- cGCcGGCGGcgUCgAUCAGcgugUCCUCGCc -3'
miRNA:   3'- -CGuCCGCUuuGGgUGGUCa---AGGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 17834 0.74 0.269972
Target:  5'- uCGGGCGGGuugauGCCCGCCAccGUggCCUCGUc -3'
miRNA:   3'- cGUCCGCUU-----UGGGUGGU--CAa-GGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 17688 0.72 0.373945
Target:  5'- cGUAGGCGAAGCgCCACUcGggCCgggaaaugcccaUCGCg -3'
miRNA:   3'- -CGUCCGCUUUG-GGUGGuCaaGG------------AGCG- -5'
26758 3' -54.2 NC_005808.1 + 17082 0.71 0.440172
Target:  5'- -aAGGCGAAGCCgGCgCGGUU-CUCGg -3'
miRNA:   3'- cgUCCGCUUUGGgUG-GUCAAgGAGCg -5'
26758 3' -54.2 NC_005808.1 + 16786 0.67 0.634339
Target:  5'- -aAGGCGAuGgUCGCCAGUUgCCaguuggUCGCg -3'
miRNA:   3'- cgUCCGCUuUgGGUGGUCAA-GG------AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.