miRNA display CGI


Results 41 - 60 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26758 3' -54.2 NC_005808.1 + 33866 0.66 0.723334
Target:  5'- gGUAGcGCcgcGCCCGCCGGgcacaUCUUCGUg -3'
miRNA:   3'- -CGUC-CGcuuUGGGUGGUCa----AGGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 2515 0.66 0.723334
Target:  5'- uUAGGCGggGCUUcgguucguagACCAGgaaUUCGCg -3'
miRNA:   3'- cGUCCGCuuUGGG----------UGGUCaagGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 13439 0.67 0.645588
Target:  5'- --cGGC-AGGCCCGCCAGcuuggcggCCUCGg -3'
miRNA:   3'- cguCCGcUUUGGGUGGUCaa------GGAGCg -5'
26758 3' -54.2 NC_005808.1 + 1314 0.67 0.645588
Target:  5'- -aGGGCGAcGgCCACCAGg-CCgacaagCGCg -3'
miRNA:   3'- cgUCCGCUuUgGGUGGUCaaGGa-----GCG- -5'
26758 3' -54.2 NC_005808.1 + 3480 0.67 0.644463
Target:  5'- cGCGGGCGAGuucgacgGCCCgcuguACCAGUaCgCagCGCg -3'
miRNA:   3'- -CGUCCGCUU-------UGGG-----UGGUCAaG-Ga-GCG- -5'
26758 3' -54.2 NC_005808.1 + 16786 0.67 0.634339
Target:  5'- -aAGGCGAuGgUCGCCAGUUgCCaguuggUCGCg -3'
miRNA:   3'- cgUCCGCUuUgGGUGGUCAA-GG------AGCG- -5'
26758 3' -54.2 NC_005808.1 + 24565 0.68 0.597259
Target:  5'- gGCGauGGCGAGGCCgGCCAcggucgggccguccGgcgugUCCUUGCc -3'
miRNA:   3'- -CGU--CCGCUUUGGgUGGU--------------Ca----AGGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 19052 0.68 0.578267
Target:  5'- cGCcGGCGGcgUCgAUCAGcgugUCCUCGCc -3'
miRNA:   3'- -CGuCCGCUuuGGgUGGUCa---AGGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 36278 0.68 0.578267
Target:  5'- -gGGGCGGAACgCGCCGcg-UCUUGCa -3'
miRNA:   3'- cgUCCGCUUUGgGUGGUcaaGGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 22492 0.68 0.578267
Target:  5'- gGCGGGCuGGGcuggucauGCCCGCCAucaUCCcCGCa -3'
miRNA:   3'- -CGUCCG-CUU--------UGGGUGGUca-AGGaGCG- -5'
26758 3' -54.2 NC_005808.1 + 11362 0.67 0.656824
Target:  5'- cGguGGCGAccuGCUCGCCcGGcaCCUCGg -3'
miRNA:   3'- -CguCCGCUu--UGGGUGG-UCaaGGAGCg -5'
26758 3' -54.2 NC_005808.1 + 31817 0.69 0.534182
Target:  5'- -aAGGCGAAGCCCAUgAa--CCUgCGCa -3'
miRNA:   3'- cgUCCGCUUUGGGUGgUcaaGGA-GCG- -5'
26758 3' -54.2 NC_005808.1 + 6387 0.66 0.722246
Target:  5'- uCAGGCGcAGGCCgGCCGGc-CCgguguagUCGCg -3'
miRNA:   3'- cGUCCGC-UUUGGgUGGUCaaGG-------AGCG- -5'
26758 3' -54.2 NC_005808.1 + 10397 0.66 0.712415
Target:  5'- cCGGGUGAugcAGCgCGCCGauggCCUCGCc -3'
miRNA:   3'- cGUCCGCU---UUGgGUGGUcaa-GGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 27592 0.66 0.712415
Target:  5'- aGCAGGCGgcGCCagaugGCguGgUCgUCGCc -3'
miRNA:   3'- -CGUCCGCuuUGGg----UGguCaAGgAGCG- -5'
26758 3' -54.2 NC_005808.1 + 24338 0.66 0.705824
Target:  5'- gGCAGaGCGAuGCCCGuguuguuggucggguCgAGggCUUCGCg -3'
miRNA:   3'- -CGUC-CGCUuUGGGU---------------GgUCaaGGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 35350 0.66 0.701414
Target:  5'- gGCcGGCGAcaucGGCCCgcGCCAGUggCCgaagUUGCa -3'
miRNA:   3'- -CGuCCGCU----UUGGG--UGGUCAa-GG----AGCG- -5'
26758 3' -54.2 NC_005808.1 + 26260 0.66 0.690343
Target:  5'- aCGGGC---ACCCGCCGGccuggUCggCUCGCg -3'
miRNA:   3'- cGUCCGcuuUGGGUGGUCa----AG--GAGCG- -5'
26758 3' -54.2 NC_005808.1 + 1761 0.66 0.690343
Target:  5'- aCAGGCG-AugCCAUauuGUUCCUC-Ca -3'
miRNA:   3'- cGUCCGCuUugGGUGgu-CAAGGAGcG- -5'
26758 3' -54.2 NC_005808.1 + 1629 0.66 0.679213
Target:  5'- uCGGGCGugucguACCCAUCGGgguaggUCUgCGCg -3'
miRNA:   3'- cGUCCGCuu----UGGGUGGUCa-----AGGaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.