miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26758 3' -54.2 NC_005808.1 + 37070 0.67 0.656824
Target:  5'- -uGGGCGGAACCUgggcgGCCGGcgugUCCUaCGa -3'
miRNA:   3'- cgUCCGCUUUGGG-----UGGUCa---AGGA-GCg -5'
26758 3' -54.2 NC_005808.1 + 13439 0.67 0.645588
Target:  5'- --cGGC-AGGCCCGCCAGcuuggcggCCUCGg -3'
miRNA:   3'- cguCCGcUUUGGGUGGUCaa------GGAGCg -5'
26758 3' -54.2 NC_005808.1 + 1314 0.67 0.645588
Target:  5'- -aGGGCGAcGgCCACCAGg-CCgacaagCGCg -3'
miRNA:   3'- cgUCCGCUuUgGGUGGUCaaGGa-----GCG- -5'
26758 3' -54.2 NC_005808.1 + 3480 0.67 0.644463
Target:  5'- cGCGGGCGAGuucgacgGCCCgcuguACCAGUaCgCagCGCg -3'
miRNA:   3'- -CGUCCGCUU-------UGGG-----UGGUCAaG-Ga-GCG- -5'
26758 3' -54.2 NC_005808.1 + 12165 0.67 0.634339
Target:  5'- -aGGGCGAGGCCCuGCCcGcgCUcaUCGCc -3'
miRNA:   3'- cgUCCGCUUUGGG-UGGuCaaGG--AGCG- -5'
26758 3' -54.2 NC_005808.1 + 41253 0.67 0.634339
Target:  5'- cGCaAGGCc--GCCgACCAcggcUUCCUCGCg -3'
miRNA:   3'- -CG-UCCGcuuUGGgUGGUc---AAGGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 16786 0.67 0.634339
Target:  5'- -aAGGCGAuGgUCGCCAGUUgCCaguuggUCGCg -3'
miRNA:   3'- cgUCCGCUuUgGGUGGUCAA-GG------AGCG- -5'
26758 3' -54.2 NC_005808.1 + 1751 0.67 0.623088
Target:  5'- cCGGGCGGucauGGCCgGCCuGcgCCUgGCg -3'
miRNA:   3'- cGUCCGCU----UUGGgUGGuCaaGGAgCG- -5'
26758 3' -54.2 NC_005808.1 + 34752 0.67 0.623088
Target:  5'- ---cGCGAAGCCCGCCuca-CCaUCGCg -3'
miRNA:   3'- cgucCGCUUUGGGUGGucaaGG-AGCG- -5'
26758 3' -54.2 NC_005808.1 + 13301 0.68 0.611846
Target:  5'- uGCuGGGCaAGGgCCAgCAGUUCgUCGCc -3'
miRNA:   3'- -CG-UCCGcUUUgGGUgGUCAAGgAGCG- -5'
26758 3' -54.2 NC_005808.1 + 24565 0.68 0.597259
Target:  5'- gGCGauGGCGAGGCCgGCCAcggucgggccguccGgcgugUCCUUGCc -3'
miRNA:   3'- -CGU--CCGCUUUGGgUGGU--------------Ca----AGGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 19052 0.68 0.578267
Target:  5'- cGCcGGCGGcgUCgAUCAGcgugUCCUCGCc -3'
miRNA:   3'- -CGuCCGCUuuGGgUGGUCa---AGGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 22492 0.68 0.578267
Target:  5'- gGCGGGCuGGGcuggucauGCCCGCCAucaUCCcCGCa -3'
miRNA:   3'- -CGUCCG-CUU--------UGGGUGGUca-AGGaGCG- -5'
26758 3' -54.2 NC_005808.1 + 36278 0.68 0.578267
Target:  5'- -gGGGCGGAACgCGCCGcg-UCUUGCa -3'
miRNA:   3'- cgUCCGCUUUGgGUGGUcaaGGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 29619 0.68 0.567155
Target:  5'- gGCGGGCGGuuuucggaaCUGCCGGUgUCCauUCGCg -3'
miRNA:   3'- -CGUCCGCUuug------GGUGGUCA-AGG--AGCG- -5'
26758 3' -54.2 NC_005808.1 + 30424 0.68 0.567155
Target:  5'- gGCAuGGCGAugAGCgCgGgCAGggCCUCGCc -3'
miRNA:   3'- -CGU-CCGCU--UUG-GgUgGUCaaGGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 7252 0.68 0.567155
Target:  5'- cGCGGGCcGAugUCGCCGG--CCUUGUg -3'
miRNA:   3'- -CGUCCGcUUugGGUGGUCaaGGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 19111 0.69 0.545104
Target:  5'- cGCAGGuCGAGauucccacgGCgCACCuGUUCCaCGCc -3'
miRNA:   3'- -CGUCC-GCUU---------UGgGUGGuCAAGGaGCG- -5'
26758 3' -54.2 NC_005808.1 + 31817 0.69 0.534182
Target:  5'- -aAGGCGAAGCCCAUgAa--CCUgCGCa -3'
miRNA:   3'- cgUCCGCUUUGGGUGgUcaaGGA-GCG- -5'
26758 3' -54.2 NC_005808.1 + 31453 0.69 0.522258
Target:  5'- cGCAGGCG--GCCCAgCAGcaggCCgaacugcUCGCa -3'
miRNA:   3'- -CGUCCGCuuUGGGUgGUCaa--GG-------AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.