miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26758 5' -59.5 NC_005808.1 + 34443 0.7 0.238578
Target:  5'- cACGCgCAGGGAcgcaGCGCCgACaCCCGCa -3'
miRNA:   3'- -UGCG-GUUCCUuca-CGCGG-UGcGGGCG- -5'
26758 5' -59.5 NC_005808.1 + 33922 0.73 0.143568
Target:  5'- aACGCCGAGGucGcGCGgCACGCaaugccgaCCGCg -3'
miRNA:   3'- -UGCGGUUCCuuCaCGCgGUGCG--------GGCG- -5'
26758 5' -59.5 NC_005808.1 + 33844 0.71 0.187783
Target:  5'- cGCGCgCAAauuccauguugacGGua--GCGCCGCGCCCGCc -3'
miRNA:   3'- -UGCG-GUU-------------CCuucaCGCGGUGCGGGCG- -5'
26758 5' -59.5 NC_005808.1 + 33747 0.68 0.299626
Target:  5'- gGCGaCCGAGGccaacGCG-CugGCCCGCg -3'
miRNA:   3'- -UGC-GGUUCCuuca-CGCgGugCGGGCG- -5'
26758 5' -59.5 NC_005808.1 + 33726 0.67 0.380829
Target:  5'- gACGCCAAGGccGaaCGCUAcCGCaCCGUc -3'
miRNA:   3'- -UGCGGUUCCuuCacGCGGU-GCG-GGCG- -5'
26758 5' -59.5 NC_005808.1 + 33700 0.69 0.251181
Target:  5'- cGCGCCGccGAua-GCGCCAUucacaaugauGCCCGCg -3'
miRNA:   3'- -UGCGGUucCUucaCGCGGUG----------CGGGCG- -5'
26758 5' -59.5 NC_005808.1 + 33384 0.76 0.081984
Target:  5'- cGCGCCGcaGAAcGUGCGCCGCGCCgccgaGCa -3'
miRNA:   3'- -UGCGGUucCUU-CACGCGGUGCGGg----CG- -5'
26758 5' -59.5 NC_005808.1 + 33305 0.71 0.193377
Target:  5'- uCGCCGAGGAAGUcaauGCGCa--GCCgGUg -3'
miRNA:   3'- uGCGGUUCCUUCA----CGCGgugCGGgCG- -5'
26758 5' -59.5 NC_005808.1 + 32886 0.7 0.22067
Target:  5'- cGCGCCcgacuGGAAGgacaacaagaacUGCgGCCACGgCCUGCa -3'
miRNA:   3'- -UGCGGuu---CCUUC------------ACG-CGGUGC-GGGCG- -5'
26758 5' -59.5 NC_005808.1 + 32616 0.67 0.338462
Target:  5'- cGCGUCAAGGGccgcGaCGCCGCGgUCGCu -3'
miRNA:   3'- -UGCGGUUCCUuca-C-GCGGUGCgGGCG- -5'
26758 5' -59.5 NC_005808.1 + 32470 0.69 0.251181
Target:  5'- cUGCCGAGGuGGggGCgGCCgauGCGCCCGa -3'
miRNA:   3'- uGCGGUUCCuUCa-CG-CGG---UGCGGGCg -5'
26758 5' -59.5 NC_005808.1 + 32153 0.66 0.398739
Target:  5'- gACGCCAAGG----GCGCCAuUGCCaaGCu -3'
miRNA:   3'- -UGCGGUUCCuucaCGCGGU-GCGGg-CG- -5'
26758 5' -59.5 NC_005808.1 + 29337 0.69 0.271107
Target:  5'- gACGCCAAGGAuggcaacuGGcugGCGCUACuGCCgaaggaaaCGCa -3'
miRNA:   3'- -UGCGGUUCCU--------UCa--CGCGGUG-CGG--------GCG- -5'
26758 5' -59.5 NC_005808.1 + 29090 0.7 0.230673
Target:  5'- gGCGCCGAGGucaggcccGUGCgggacuugcugccgGUCACGCgCGCg -3'
miRNA:   3'- -UGCGGUUCCuu------CACG--------------CGGUGCGgGCG- -5'
26758 5' -59.5 NC_005808.1 + 28381 0.86 0.015601
Target:  5'- cGCGCCAAGGAAGccGCGCUGCGCCUGa -3'
miRNA:   3'- -UGCGGUUCCUUCa-CGCGGUGCGGGCg -5'
26758 5' -59.5 NC_005808.1 + 26088 0.68 0.330411
Target:  5'- gGCGggccucaauCCAGuGGuacaccGUGCGCCAUGCCgGCa -3'
miRNA:   3'- -UGC---------GGUU-CCuu----CACGCGGUGCGGgCG- -5'
26758 5' -59.5 NC_005808.1 + 25354 0.67 0.338462
Target:  5'- uUGCCGaacgguuggAGGggGUGaUGuCCaACGUCCGCg -3'
miRNA:   3'- uGCGGU---------UCCuuCAC-GC-GG-UGCGGGCG- -5'
26758 5' -59.5 NC_005808.1 + 25296 0.66 0.41718
Target:  5'- uAUGCCGgaauGGAuGcGCGCCcgcgGCGCCgGCu -3'
miRNA:   3'- -UGCGGUu---CCUuCaCGCGG----UGCGGgCG- -5'
26758 5' -59.5 NC_005808.1 + 25291 0.67 0.380829
Target:  5'- aAUGCCuuGAGGucGUGCgGCCG-GCCCuGCc -3'
miRNA:   3'- -UGCGG--UUCCuuCACG-CGGUgCGGG-CG- -5'
26758 5' -59.5 NC_005808.1 + 24655 0.75 0.108758
Target:  5'- -gGCC-AGGAuGGUGuUGUCGCGCCCGCc -3'
miRNA:   3'- ugCGGuUCCU-UCAC-GCGGUGCGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.