miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26758 5' -59.5 NC_005808.1 + 33700 0.69 0.251181
Target:  5'- cGCGCCGccGAua-GCGCCAUucacaaugauGCCCGCg -3'
miRNA:   3'- -UGCGGUucCUucaCGCGGUG----------CGGGCG- -5'
26758 5' -59.5 NC_005808.1 + 8173 0.7 0.244812
Target:  5'- -gGCCcAGGAAGgcgcugGCGUCcUGCCCGUu -3'
miRNA:   3'- ugCGGuUCCUUCa-----CGCGGuGCGGGCG- -5'
26758 5' -59.5 NC_005808.1 + 33305 0.71 0.193377
Target:  5'- uCGCCGAGGAAGUcaauGCGCa--GCCgGUg -3'
miRNA:   3'- uGCGGUUCCUUCA----CGCGgugCGGgCG- -5'
26758 5' -59.5 NC_005808.1 + 16053 0.73 0.139673
Target:  5'- cACGuUCAAGGAGGgcgGCGCCAUGCugaaaaCCGUg -3'
miRNA:   3'- -UGC-GGUUCCUUCa--CGCGGUGCG------GGCG- -5'
26758 5' -59.5 NC_005808.1 + 5808 0.67 0.35499
Target:  5'- aGCGCCAGcGGAuagucgggcauGGcGUGCCGCaGCaCCGUg -3'
miRNA:   3'- -UGCGGUU-CCU-----------UCaCGCGGUG-CG-GGCG- -5'
26758 5' -59.5 NC_005808.1 + 40548 0.68 0.322501
Target:  5'- gACcCCGAGGAAuuGcGCGCCGuguucuauCGCCUGCg -3'
miRNA:   3'- -UGcGGUUCCUU--CaCGCGGU--------GCGGGCG- -5'
26758 5' -59.5 NC_005808.1 + 12715 0.7 0.238578
Target:  5'- cAUGCCGGGGggGgggugGUGCUAgaccCGUUCGCa -3'
miRNA:   3'- -UGCGGUUCCuuCa----CGCGGU----GCGGGCG- -5'
26758 5' -59.5 NC_005808.1 + 8686 0.74 0.118275
Target:  5'- uGCGCCGcccAGGu-GUGCGCCGCGCagauUGCu -3'
miRNA:   3'- -UGCGGU---UCCuuCACGCGGUGCGg---GCG- -5'
26758 5' -59.5 NC_005808.1 + 33747 0.68 0.299626
Target:  5'- gGCGaCCGAGGccaacGCG-CugGCCCGCg -3'
miRNA:   3'- -UGC-GGUUCCuuca-CGCgGugCGGGCG- -5'
26758 5' -59.5 NC_005808.1 + 33384 0.76 0.081984
Target:  5'- cGCGCCGcaGAAcGUGCGCCGCGCCgccgaGCa -3'
miRNA:   3'- -UGCGGUucCUU-CACGCGGUGCGGg----CG- -5'
26758 5' -59.5 NC_005808.1 + 34443 0.7 0.238578
Target:  5'- cACGCgCAGGGAcgcaGCGCCgACaCCCGCa -3'
miRNA:   3'- -UGCG-GUUCCUuca-CGCGG-UGcGGGCG- -5'
26758 5' -59.5 NC_005808.1 + 29337 0.69 0.271107
Target:  5'- gACGCCAAGGAuggcaacuGGcugGCGCUACuGCCgaaggaaaCGCa -3'
miRNA:   3'- -UGCGGUUCCU--------UCa--CGCGGUG-CGG--------GCG- -5'
26758 5' -59.5 NC_005808.1 + 8295 0.7 0.238578
Target:  5'- cUGCCGGGGcAGUGCaGCCAgcggUGCgCGCu -3'
miRNA:   3'- uGCGGUUCCuUCACG-CGGU----GCGgGCG- -5'
26758 5' -59.5 NC_005808.1 + 19058 0.7 0.213834
Target:  5'- -gGCCGAGGccaucgaccgcGUGCGCCgccuggaaggcGCGCUCGCg -3'
miRNA:   3'- ugCGGUUCCuu---------CACGCGG-----------UGCGGGCG- -5'
26758 5' -59.5 NC_005808.1 + 16541 0.72 0.164567
Target:  5'- uCGCCGAGcgcauGGAGcGCGCC-CGCCgCGCg -3'
miRNA:   3'- uGCGGUUC-----CUUCaCGCGGuGCGG-GCG- -5'
26758 5' -59.5 NC_005808.1 + 33922 0.73 0.143568
Target:  5'- aACGCCGAGGucGcGCGgCACGCaaugccgaCCGCg -3'
miRNA:   3'- -UGCGGUUCCuuCaCGCgGUGCG--------GGCG- -5'
26758 5' -59.5 NC_005808.1 + 34952 0.66 0.398739
Target:  5'- uACGgCAAGGAGccggcGUGggucgaGCCGCGCCCc- -3'
miRNA:   3'- -UGCgGUUCCUU-----CACg-----CGGUGCGGGcg -5'
26758 5' -59.5 NC_005808.1 + 6295 0.66 0.389717
Target:  5'- gGCGCCGGGGcuuaucuccGGUGCGUgcaagacgcggCGCGuUCCGCc -3'
miRNA:   3'- -UGCGGUUCCu--------UCACGCG-----------GUGC-GGGCG- -5'
26758 5' -59.5 NC_005808.1 + 590 0.67 0.346655
Target:  5'- cUGCuCGGGGuAGUGCuucGCCAUGUCgGCg -3'
miRNA:   3'- uGCG-GUUCCuUCACG---CGGUGCGGgCG- -5'
26758 5' -59.5 NC_005808.1 + 18650 0.68 0.32723
Target:  5'- aAUGCCGAccucgccGGgcGUGCGCCugaccaucacgccuAUGCCgGCa -3'
miRNA:   3'- -UGCGGUU-------CCuuCACGCGG--------------UGCGGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.