miRNA display CGI


Results 41 - 60 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26758 5' -59.5 NC_005808.1 + 6463 0.68 0.292285
Target:  5'- uCGCCGucgcgcAGGAAcUGCacGCCGCgcagGCCCGCa -3'
miRNA:   3'- uGCGGU------UCCUUcACG--CGGUG----CGGGCG- -5'
26758 5' -59.5 NC_005808.1 + 33747 0.68 0.299626
Target:  5'- gGCGaCCGAGGccaacGCG-CugGCCCGCg -3'
miRNA:   3'- -UGC-GGUUCCuuca-CGCgGugCGGGCG- -5'
26758 5' -59.5 NC_005808.1 + 32153 0.66 0.398739
Target:  5'- gACGCCAAGG----GCGCCAuUGCCaaGCu -3'
miRNA:   3'- -UGCGGUUCCuucaCGCGGU-GCGGg-CG- -5'
26758 5' -59.5 NC_005808.1 + 28381 0.86 0.015601
Target:  5'- cGCGCCAAGGAAGccGCGCUGCGCCUGa -3'
miRNA:   3'- -UGCGGUUCCUUCa-CGCGGUGCGGGCg -5'
26758 5' -59.5 NC_005808.1 + 16965 0.66 0.436132
Target:  5'- cUGCCGAGGuGGacGCGCUgcugGCGaCCGCg -3'
miRNA:   3'- uGCGGUUCCuUCa-CGCGG----UGCgGGCG- -5'
26758 5' -59.5 NC_005808.1 + 39023 0.66 0.41718
Target:  5'- -gGCCGcGGAucGGUGUacGCC-CaGCCCGCu -3'
miRNA:   3'- ugCGGUuCCU--UCACG--CGGuG-CGGGCG- -5'
26758 5' -59.5 NC_005808.1 + 33844 0.71 0.187783
Target:  5'- cGCGCgCAAauuccauguugacGGua--GCGCCGCGCCCGCc -3'
miRNA:   3'- -UGCG-GUU-------------CCuucaCGCGGUGCGGGCG- -5'
26758 5' -59.5 NC_005808.1 + 13189 0.66 0.389717
Target:  5'- gGCGCCcuuGGccG-GCGUugUACGCCUGCa -3'
miRNA:   3'- -UGCGGuu-CCuuCaCGCG--GUGCGGGCG- -5'
26758 5' -59.5 NC_005808.1 + 20749 0.75 0.102817
Target:  5'- gGCGCCGuaGAGGcgcUGCGCCGCGCUCGa -3'
miRNA:   3'- -UGCGGUucCUUC---ACGCGGUGCGGGCg -5'
26758 5' -59.5 NC_005808.1 + 35848 0.71 0.203382
Target:  5'- uCGCCAAGGAaaAGUgggGCGCCaaggccgACGCCgUGCu -3'
miRNA:   3'- uGCGGUUCCU--UCA---CGCGG-------UGCGG-GCG- -5'
26758 5' -59.5 NC_005808.1 + 24119 0.7 0.232478
Target:  5'- cGCGCguAGGGgucguAGUccagccggcugcGCGCCugGCCCaGCg -3'
miRNA:   3'- -UGCGguUCCU-----UCA------------CGCGGugCGGG-CG- -5'
26758 5' -59.5 NC_005808.1 + 38203 0.67 0.380829
Target:  5'- cACGCuCAAGGcccGGcgcgacgGCGCCugGCUgCGCa -3'
miRNA:   3'- -UGCG-GUUCCu--UCa------CGCGGugCGG-GCG- -5'
26758 5' -59.5 NC_005808.1 + 33726 0.67 0.380829
Target:  5'- gACGCCAAGGccGaaCGCUAcCGCaCCGUc -3'
miRNA:   3'- -UGCGGUUCCuuCacGCGGU-GCG-GGCG- -5'
26758 5' -59.5 NC_005808.1 + 36266 0.67 0.372078
Target:  5'- gGCGCUuuggcuGGGgcGgaacGCGCCGCGuCuuGCa -3'
miRNA:   3'- -UGCGGu-----UCCuuCa---CGCGGUGC-GggCG- -5'
26758 5' -59.5 NC_005808.1 + 6661 0.67 0.363464
Target:  5'- cGCGCuCAuGGuc-UGCGCCACGCCg-- -3'
miRNA:   3'- -UGCG-GUuCCuucACGCGGUGCGGgcg -5'
26758 5' -59.5 NC_005808.1 + 35208 0.67 0.363464
Target:  5'- -aGCUGGuGGAAG-GuCGCCGCgguGCCCGCc -3'
miRNA:   3'- ugCGGUU-CCUUCaC-GCGGUG---CGGGCG- -5'
26758 5' -59.5 NC_005808.1 + 38751 0.67 0.358363
Target:  5'- gGCGgCGAGGugcgcaAAGUGCGCUggauuggucgcaacgGCGCCCcCg -3'
miRNA:   3'- -UGCgGUUCC------UUCACGCGG---------------UGCGGGcG- -5'
26758 5' -59.5 NC_005808.1 + 35249 0.69 0.278026
Target:  5'- gACGCCGAGGucGaG-GCCGCGCUCa- -3'
miRNA:   3'- -UGCGGUUCCuuCaCgCGGUGCGGGcg -5'
26758 5' -59.5 NC_005808.1 + 10750 0.69 0.271107
Target:  5'- uCGCCAAGGGc--GCGCUcgACuucgGCCCGCa -3'
miRNA:   3'- uGCGGUUCCUucaCGCGG--UG----CGGGCG- -5'
26758 5' -59.5 NC_005808.1 + 32470 0.69 0.251181
Target:  5'- cUGCCGAGGuGGggGCgGCCgauGCGCCCGa -3'
miRNA:   3'- uGCGGUUCCuUCa-CG-CGG---UGCGGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.