Results 61 - 80 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26758 | 5' | -59.5 | NC_005808.1 | + | 29090 | 0.7 | 0.230673 |
Target: 5'- gGCGCCGAGGucaggcccGUGCgggacuugcugccgGUCACGCgCGCg -3' miRNA: 3'- -UGCGGUUCCuu------CACG--------------CGGUGCGgGCG- -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 35898 | 0.68 | 0.307109 |
Target: 5'- cGCGCCcAGGAcaaGGUGUGCC-UGCacgaUGCg -3' miRNA: 3'- -UGCGGuUCCU---UCACGCGGuGCGg---GCG- -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 34765 | 0.68 | 0.314734 |
Target: 5'- uGCGCCu-GGucaucGUGCaGCCGCGCCuCGa -3' miRNA: 3'- -UGCGGuuCCuu---CACG-CGGUGCGG-GCg -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 349 | 0.66 | 0.436132 |
Target: 5'- cGCGCagcAGGccGUcCGCCAgGCCCGa -3' miRNA: 3'- -UGCGgu-UCCuuCAcGCGGUgCGGGCg -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 22480 | 0.66 | 0.407895 |
Target: 5'- gGCGgaaCCAGGGgcGggcuggGCugGUCAUGCCCGCc -3' miRNA: 3'- -UGC---GGUUCCuuCa-----CG--CGGUGCGGGCG- -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 17268 | 0.66 | 0.39331 |
Target: 5'- -aGCCGGGGAuauugccguccacgaAGccgGCGCCGCggGCgCGCa -3' miRNA: 3'- ugCGGUUCCU---------------UCa--CGCGGUG--CGgGCG- -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 24492 | 0.66 | 0.389717 |
Target: 5'- nCGCC-AGGAAGUcguaggggcugGCGCCcACGCCg-- -3' miRNA: 3'- uGCGGuUCCUUCA-----------CGCGG-UGCGGgcg -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 17448 | 0.66 | 0.389717 |
Target: 5'- cCGCCAGcaucGAGGccagGUGCCACGCCaggGCc -3' miRNA: 3'- uGCGGUUc---CUUCa---CGCGGUGCGGg--CG- -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 25291 | 0.67 | 0.380829 |
Target: 5'- aAUGCCuuGAGGucGUGCgGCCG-GCCCuGCc -3' miRNA: 3'- -UGCGG--UUCCuuCACG-CGGUgCGGG-CG- -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 13189 | 0.66 | 0.389717 |
Target: 5'- gGCGCCcuuGGccG-GCGUugUACGCCUGCa -3' miRNA: 3'- -UGCGGuu-CCuuCaCGCG--GUGCGGGCG- -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 38203 | 0.67 | 0.380829 |
Target: 5'- cACGCuCAAGGcccGGcgcgacgGCGCCugGCUgCGCa -3' miRNA: 3'- -UGCG-GUUCCu--UCa------CGCGGugCGG-GCG- -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 33726 | 0.67 | 0.380829 |
Target: 5'- gACGCCAAGGccGaaCGCUAcCGCaCCGUc -3' miRNA: 3'- -UGCGGUUCCuuCacGCGGU-GCG-GGCG- -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 36266 | 0.67 | 0.372078 |
Target: 5'- gGCGCUuuggcuGGGgcGgaacGCGCCGCGuCuuGCa -3' miRNA: 3'- -UGCGGu-----UCCuuCa---CGCGGUGC-GggCG- -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 6661 | 0.67 | 0.363464 |
Target: 5'- cGCGCuCAuGGuc-UGCGCCACGCCg-- -3' miRNA: 3'- -UGCG-GUuCCuucACGCGGUGCGGgcg -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 35208 | 0.67 | 0.363464 |
Target: 5'- -aGCUGGuGGAAG-GuCGCCGCgguGCCCGCc -3' miRNA: 3'- ugCGGUU-CCUUCaC-GCGGUG---CGGGCG- -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 38751 | 0.67 | 0.358363 |
Target: 5'- gGCGgCGAGGugcgcaAAGUGCGCUggauuggucgcaacgGCGCCCcCg -3' miRNA: 3'- -UGCgGUUCC------UUCACGCGG---------------UGCGGGcG- -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 32616 | 0.67 | 0.338462 |
Target: 5'- cGCGUCAAGGGccgcGaCGCCGCGgUCGCu -3' miRNA: 3'- -UGCGGUUCCUuca-C-GCGGUGCgGGCG- -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 10468 | 0.67 | 0.338462 |
Target: 5'- uCGCCcuGGAAGUcGCGCagCACcgGCCCGa -3' miRNA: 3'- uGCGGuuCCUUCA-CGCG--GUG--CGGGCg -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 26088 | 0.68 | 0.330411 |
Target: 5'- gGCGggccucaauCCAGuGGuacaccGUGCGCCAUGCCgGCa -3' miRNA: 3'- -UGC---------GGUU-CCuu----CACGCGGUGCGGgCG- -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 6972 | 0.68 | 0.314734 |
Target: 5'- uGCGCaacucguugauuCGcGGAAGcGCGuCCGCGCCCGa -3' miRNA: 3'- -UGCG------------GUuCCUUCaCGC-GGUGCGGGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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