miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26758 5' -59.5 NC_005808.1 + 33726 0.67 0.380829
Target:  5'- gACGCCAAGGccGaaCGCUAcCGCaCCGUc -3'
miRNA:   3'- -UGCGGUUCCuuCacGCGGU-GCG-GGCG- -5'
26758 5' -59.5 NC_005808.1 + 36266 0.67 0.372078
Target:  5'- gGCGCUuuggcuGGGgcGgaacGCGCCGCGuCuuGCa -3'
miRNA:   3'- -UGCGGu-----UCCuuCa---CGCGGUGC-GggCG- -5'
26758 5' -59.5 NC_005808.1 + 35208 0.67 0.363464
Target:  5'- -aGCUGGuGGAAG-GuCGCCGCgguGCCCGCc -3'
miRNA:   3'- ugCGGUU-CCUUCaC-GCGGUG---CGGGCG- -5'
26758 5' -59.5 NC_005808.1 + 6661 0.67 0.363464
Target:  5'- cGCGCuCAuGGuc-UGCGCCACGCCg-- -3'
miRNA:   3'- -UGCG-GUuCCuucACGCGGUGCGGgcg -5'
26758 5' -59.5 NC_005808.1 + 38751 0.67 0.358363
Target:  5'- gGCGgCGAGGugcgcaAAGUGCGCUggauuggucgcaacgGCGCCCcCg -3'
miRNA:   3'- -UGCgGUUCC------UUCACGCGG---------------UGCGGGcG- -5'
26758 5' -59.5 NC_005808.1 + 5808 0.67 0.35499
Target:  5'- aGCGCCAGcGGAuagucgggcauGGcGUGCCGCaGCaCCGUg -3'
miRNA:   3'- -UGCGGUU-CCU-----------UCaCGCGGUG-CG-GGCG- -5'
26758 5' -59.5 NC_005808.1 + 22717 0.67 0.35499
Target:  5'- -gGCCAAGaAGGcGCGCgACGCCUucgGCa -3'
miRNA:   3'- ugCGGUUCcUUCaCGCGgUGCGGG---CG- -5'
26758 5' -59.5 NC_005808.1 + 42121 0.67 0.353312
Target:  5'- cUGCCGAGGcauccgaccGCGacaGCGCCCGCa -3'
miRNA:   3'- uGCGGUUCCuuca-----CGCgg-UGCGGGCG- -5'
26758 5' -59.5 NC_005808.1 + 590 0.67 0.346655
Target:  5'- cUGCuCGGGGuAGUGCuucGCCAUGUCgGCg -3'
miRNA:   3'- uGCG-GUUCCuUCACG---CGGUGCGGgCG- -5'
26758 5' -59.5 NC_005808.1 + 32616 0.67 0.338462
Target:  5'- cGCGUCAAGGGccgcGaCGCCGCGgUCGCu -3'
miRNA:   3'- -UGCGGUUCCUuca-C-GCGGUGCgGGCG- -5'
26758 5' -59.5 NC_005808.1 + 10468 0.67 0.338462
Target:  5'- uCGCCcuGGAAGUcGCGCagCACcgGCCCGa -3'
miRNA:   3'- uGCGGuuCCUUCA-CGCG--GUG--CGGGCg -5'
26758 5' -59.5 NC_005808.1 + 25354 0.67 0.338462
Target:  5'- uUGCCGaacgguuggAGGggGUGaUGuCCaACGUCCGCg -3'
miRNA:   3'- uGCGGU---------UCCuuCAC-GC-GG-UGCGGGCG- -5'
26758 5' -59.5 NC_005808.1 + 26088 0.68 0.330411
Target:  5'- gGCGggccucaauCCAGuGGuacaccGUGCGCCAUGCCgGCa -3'
miRNA:   3'- -UGC---------GGUU-CCuu----CACGCGGUGCGGgCG- -5'
26758 5' -59.5 NC_005808.1 + 23351 0.68 0.330411
Target:  5'- gACGCCGA-GAAGUucauGgGCCugACGCCgCGCu -3'
miRNA:   3'- -UGCGGUUcCUUCA----CgCGG--UGCGG-GCG- -5'
26758 5' -59.5 NC_005808.1 + 18650 0.68 0.32723
Target:  5'- aAUGCCGAccucgccGGgcGUGCGCCugaccaucacgccuAUGCCgGCa -3'
miRNA:   3'- -UGCGGUU-------CCuuCACGCGG--------------UGCGGgCG- -5'
26758 5' -59.5 NC_005808.1 + 40548 0.68 0.322501
Target:  5'- gACcCCGAGGAAuuGcGCGCCGuguucuauCGCCUGCg -3'
miRNA:   3'- -UGcGGUUCCUU--CaCGCGGU--------GCGGGCG- -5'
26758 5' -59.5 NC_005808.1 + 34765 0.68 0.314734
Target:  5'- uGCGCCu-GGucaucGUGCaGCCGCGCCuCGa -3'
miRNA:   3'- -UGCGGuuCCuu---CACG-CGGUGCGG-GCg -5'
26758 5' -59.5 NC_005808.1 + 6972 0.68 0.314734
Target:  5'- uGCGCaacucguugauuCGcGGAAGcGCGuCCGCGCCCGa -3'
miRNA:   3'- -UGCG------------GUuCCUUCaCGC-GGUGCGGGCg -5'
26758 5' -59.5 NC_005808.1 + 35898 0.68 0.307109
Target:  5'- cGCGCCcAGGAcaaGGUGUGCC-UGCacgaUGCg -3'
miRNA:   3'- -UGCGGuUCCU---UCACGCGGuGCGg---GCG- -5'
26758 5' -59.5 NC_005808.1 + 33747 0.68 0.299626
Target:  5'- gGCGaCCGAGGccaacGCG-CugGCCCGCg -3'
miRNA:   3'- -UGC-GGUUCCuuca-CGCgGugCGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.