miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26759 3' -53.5 NC_005808.1 + 24052 1.1 0.000912
Target:  5'- aCGAUUGCGGUUUCCAUGCCGCGCACAg -3'
miRNA:   3'- -GCUAACGCCAAAGGUACGGCGCGUGU- -5'
26759 3' -53.5 NC_005808.1 + 8665 0.76 0.220238
Target:  5'- ----cGCGGUcggcaUUgCGUGCCGCGCGCAc -3'
miRNA:   3'- gcuaaCGCCA-----AAgGUACGGCGCGUGU- -5'
26759 3' -53.5 NC_005808.1 + 9985 0.74 0.295165
Target:  5'- aCGGUgagcgugGCGGggUCgaaaGUGCCGCGCGCc -3'
miRNA:   3'- -GCUAa------CGCCaaAGg---UACGGCGCGUGu -5'
26759 3' -53.5 NC_005808.1 + 9185 0.73 0.35242
Target:  5'- gCGAUagccaGCGGUggCCGUGCCGCGauaGCc -3'
miRNA:   3'- -GCUAa----CGCCAaaGGUACGGCGCg--UGu -5'
26759 3' -53.5 NC_005808.1 + 9233 0.73 0.35242
Target:  5'- gCGAUagccaGCGGUggCCGUGCCGCGauaGCc -3'
miRNA:   3'- -GCUAa----CGCCAaaGGUACGGCGCg--UGu -5'
26759 3' -53.5 NC_005808.1 + 9281 0.73 0.35242
Target:  5'- gCGAUagccaGCGGUggCCGUGCCGCGauaGCc -3'
miRNA:   3'- -GCUAa----CGCCAaaGGUACGGCGCg--UGu -5'
26759 3' -53.5 NC_005808.1 + 9329 0.73 0.35242
Target:  5'- gCGAUagccaGCGGUggCCGUGCCGCGauaGCc -3'
miRNA:   3'- -GCUAa----CGCCAaaGGUACGGCGCg--UGu -5'
26759 3' -53.5 NC_005808.1 + 9377 0.73 0.35242
Target:  5'- gCGAUagccaGCGGUggCCGUGCCGCGauaGCc -3'
miRNA:   3'- -GCUAa----CGCCAaaGGUACGGCGCg--UGu -5'
26759 3' -53.5 NC_005808.1 + 9089 0.73 0.35242
Target:  5'- gCGAUagccaGCGGUggCCGUGCCGCGauaGCc -3'
miRNA:   3'- -GCUAa----CGCCAaaGGUACGGCGCg--UGu -5'
26759 3' -53.5 NC_005808.1 + 9137 0.73 0.35242
Target:  5'- gCGAUagccaGCGGUggCCGUGCCGCGauaGCc -3'
miRNA:   3'- -GCUAa----CGCCAaaGGUACGGCGCg--UGu -5'
26759 3' -53.5 NC_005808.1 + 23914 0.73 0.343779
Target:  5'- ----cGCGGcUUCCAUGCCG-GCAUAg -3'
miRNA:   3'- gcuaaCGCCaAAGGUACGGCgCGUGU- -5'
26759 3' -53.5 NC_005808.1 + 9017 0.72 0.361215
Target:  5'- gGAUUcgccaGCGGUggCCGUGCCGCGauaGCc -3'
miRNA:   3'- gCUAA-----CGCCAaaGGUACGGCGCg--UGu -5'
26759 3' -53.5 NC_005808.1 + 11197 0.72 0.379258
Target:  5'- uGAUggUGCGGUca--AUGCCGCGCAUg -3'
miRNA:   3'- gCUA--ACGCCAaaggUACGGCGCGUGu -5'
26759 3' -53.5 NC_005808.1 + 8976 0.7 0.51
Target:  5'- gGAUUcgcaGCGGUggCCGUGCCGCcaGCGg- -3'
miRNA:   3'- gCUAA----CGCCAaaGGUACGGCG--CGUgu -5'
26759 3' -53.5 NC_005808.1 + 28548 0.7 0.499219
Target:  5'- aCGAccUUGCGGccgccggCCAUcGCgGCGCGCAc -3'
miRNA:   3'- -GCU--AACGCCaaa----GGUA-CGgCGCGUGU- -5'
26759 3' -53.5 NC_005808.1 + 9410 0.69 0.520877
Target:  5'- ----aGCGGUggCCGUGCCGaggGCGCc -3'
miRNA:   3'- gcuaaCGCCAaaGGUACGGCg--CGUGu -5'
26759 3' -53.5 NC_005808.1 + 3126 0.69 0.520877
Target:  5'- aGcgUGCGGUUUCUgaAUGCcCGCgagaaaGCGCAa -3'
miRNA:   3'- gCuaACGCCAAAGG--UACG-GCG------CGUGU- -5'
26759 3' -53.5 NC_005808.1 + 1092 0.69 0.565206
Target:  5'- aGAUUGCcuuggCCGUGUCGCGCGgCAu -3'
miRNA:   3'- gCUAACGccaaaGGUACGGCGCGU-GU- -5'
26759 3' -53.5 NC_005808.1 + 7978 0.69 0.565206
Target:  5'- ----cGCaucgGGUUUCCAUGUCGcCGCGCu -3'
miRNA:   3'- gcuaaCG----CCAAAGGUACGGC-GCGUGu -5'
26759 3' -53.5 NC_005808.1 + 18514 0.68 0.610455
Target:  5'- ---cUGCGGUcaUCCAUGCCgGUGUugGg -3'
miRNA:   3'- gcuaACGCCAa-AGGUACGG-CGCGugU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.