Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26759 | 3' | -53.5 | NC_005808.1 | + | 9185 | 0.73 | 0.35242 |
Target: 5'- gCGAUagccaGCGGUggCCGUGCCGCGauaGCc -3' miRNA: 3'- -GCUAa----CGCCAaaGGUACGGCGCg--UGu -5' |
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26759 | 3' | -53.5 | NC_005808.1 | + | 9089 | 0.73 | 0.35242 |
Target: 5'- gCGAUagccaGCGGUggCCGUGCCGCGauaGCc -3' miRNA: 3'- -GCUAa----CGCCAaaGGUACGGCGCg--UGu -5' |
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26759 | 3' | -53.5 | NC_005808.1 | + | 26316 | 0.67 | 0.644635 |
Target: 5'- aCGAccG-GGUagccUUCCGggugGCCGCGCGCGa -3' miRNA: 3'- -GCUaaCgCCA----AAGGUa---CGGCGCGUGU- -5' |
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26759 | 3' | -53.5 | NC_005808.1 | + | 9410 | 0.69 | 0.520877 |
Target: 5'- ----aGCGGUggCCGUGCCGaggGCGCc -3' miRNA: 3'- gcuaaCGCCAaaGGUACGGCg--CGUGu -5' |
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26759 | 3' | -53.5 | NC_005808.1 | + | 9017 | 0.72 | 0.361215 |
Target: 5'- gGAUUcgccaGCGGUggCCGUGCCGCGauaGCc -3' miRNA: 3'- gCUAA-----CGCCAaaGGUACGGCGCg--UGu -5' |
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26759 | 3' | -53.5 | NC_005808.1 | + | 9377 | 0.73 | 0.35242 |
Target: 5'- gCGAUagccaGCGGUggCCGUGCCGCGauaGCc -3' miRNA: 3'- -GCUAa----CGCCAaaGGUACGGCGCg--UGu -5' |
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26759 | 3' | -53.5 | NC_005808.1 | + | 21189 | 0.66 | 0.734368 |
Target: 5'- uGAacGUGGaguucgUUUCCAUGCuCGCGCAg- -3' miRNA: 3'- gCUaaCGCC------AAAGGUACG-GCGCGUgu -5' |
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26759 | 3' | -53.5 | NC_005808.1 | + | 16345 | 0.66 | 0.734368 |
Target: 5'- aGGccgGCGGgugcCCGUGCCuucggcgacGCGCGCAa -3' miRNA: 3'- gCUaa-CGCCaaa-GGUACGG---------CGCGUGU- -5' |
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26759 | 3' | -53.5 | NC_005808.1 | + | 8976 | 0.7 | 0.51 |
Target: 5'- gGAUUcgcaGCGGUggCCGUGCCGCcaGCGg- -3' miRNA: 3'- gCUAA----CGCCAaaGGUACGGCG--CGUgu -5' |
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26759 | 3' | -53.5 | NC_005808.1 | + | 9329 | 0.73 | 0.35242 |
Target: 5'- gCGAUagccaGCGGUggCCGUGCCGCGauaGCc -3' miRNA: 3'- -GCUAa----CGCCAaaGGUACGGCGCg--UGu -5' |
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26759 | 3' | -53.5 | NC_005808.1 | + | 9233 | 0.73 | 0.35242 |
Target: 5'- gCGAUagccaGCGGUggCCGUGCCGCGauaGCc -3' miRNA: 3'- -GCUAa----CGCCAaaGGUACGGCGCg--UGu -5' |
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26759 | 3' | -53.5 | NC_005808.1 | + | 9281 | 0.73 | 0.35242 |
Target: 5'- gCGAUagccaGCGGUggCCGUGCCGCGauaGCc -3' miRNA: 3'- -GCUAa----CGCCAaaGGUACGGCGCg--UGu -5' |
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26759 | 3' | -53.5 | NC_005808.1 | + | 18509 | 0.66 | 0.723404 |
Target: 5'- ----aGCGGggugcCCGUGCCcCGCGCGg -3' miRNA: 3'- gcuaaCGCCaaa--GGUACGGcGCGUGU- -5' |
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26759 | 3' | -53.5 | NC_005808.1 | + | 9137 | 0.73 | 0.35242 |
Target: 5'- gCGAUagccaGCGGUggCCGUGCCGCGauaGCc -3' miRNA: 3'- -GCUAa----CGCCAaaGGUACGGCGCg--UGu -5' |
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26759 | 3' | -53.5 | NC_005808.1 | + | 23720 | 0.66 | 0.701198 |
Target: 5'- aGGUcGCGGg--CCAgUGCCucggugGCGCGCAg -3' miRNA: 3'- gCUAaCGCCaaaGGU-ACGG------CGCGUGU- -5' |
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26759 | 3' | -53.5 | NC_005808.1 | + | 28267 | 0.67 | 0.667379 |
Target: 5'- -uGUUGCGca--CCAUGaCCGCGCGCu -3' miRNA: 3'- gcUAACGCcaaaGGUAC-GGCGCGUGu -5' |
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26759 | 3' | -53.5 | NC_005808.1 | + | 40215 | 0.67 | 0.656019 |
Target: 5'- ----aGCGaccgCCAUGCCGUGCGCc -3' miRNA: 3'- gcuaaCGCcaaaGGUACGGCGCGUGu -5' |
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26759 | 3' | -53.5 | NC_005808.1 | + | 23520 | 0.68 | 0.633239 |
Target: 5'- gCGAgcGCGccUUCCAgGCgGCGCACGc -3' miRNA: 3'- -GCUaaCGCcaAAGGUaCGgCGCGUGU- -5' |
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26759 | 3' | -53.5 | NC_005808.1 | + | 9985 | 0.74 | 0.295165 |
Target: 5'- aCGGUgagcgugGCGGggUCgaaaGUGCCGCGCGCc -3' miRNA: 3'- -GCUAa------CGCCaaAGg---UACGGCGCGUGu -5' |
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26759 | 3' | -53.5 | NC_005808.1 | + | 3126 | 0.69 | 0.520877 |
Target: 5'- aGcgUGCGGUUUCUgaAUGCcCGCgagaaaGCGCAa -3' miRNA: 3'- gCuaACGCCAAAGG--UACG-GCG------CGUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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