miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26759 5' -68 NC_005808.1 + 453 0.67 0.117858
Target:  5'- uGCUGCGCGGccaGCuuGCGGGCGCUgUCGCg -3'
miRNA:   3'- -UGGCGCGCCc--CG--UGCCCGUGG-GGCGa -5'
26759 5' -68 NC_005808.1 + 3740 0.67 0.134409
Target:  5'- cGCCG-GUGguGGGCACGucGGUGCCgCCGCUg -3'
miRNA:   3'- -UGGCgCGC--CCCGUGC--CCGUGG-GGCGA- -5'
26759 5' -68 NC_005808.1 + 4036 0.66 0.165378
Target:  5'- uGCCGCGCGGGucgagcGCAgcCGGGCGgaacuugauguCCCacagGCUg -3'
miRNA:   3'- -UGGCGCGCCC------CGU--GCCCGU-----------GGGg---CGA- -5'
26759 5' -68 NC_005808.1 + 5624 0.71 0.063548
Target:  5'- uUCGCGCGuGGCGCGGcGCAgCuuGCUg -3'
miRNA:   3'- uGGCGCGCcCCGUGCC-CGUgGggCGA- -5'
26759 5' -68 NC_005808.1 + 6161 0.67 0.117858
Target:  5'- --gGgGUGaGGCACGGGCACCCUuaGCg -3'
miRNA:   3'- uggCgCGCcCCGUGCCCGUGGGG--CGa -5'
26759 5' -68 NC_005808.1 + 8120 0.67 0.135822
Target:  5'- cACCGCGCGgccggcguugguuguGGGCguGCGGGUGucggcgcugcguCCCUGCg -3'
miRNA:   3'- -UGGCGCGC---------------CCCG--UGCCCGU------------GGGGCGa -5'
26759 5' -68 NC_005808.1 + 8293 0.66 0.141611
Target:  5'- cGCUGC-CGGGGCagugcagccaGCGGuGCGCgCUGCUc -3'
miRNA:   3'- -UGGCGcGCCCCG----------UGCC-CGUGgGGCGA- -5'
26759 5' -68 NC_005808.1 + 8997 0.69 0.095279
Target:  5'- cGCCGCGCgGGGGCgcuuccagcagGCGGcGCACCaguuCGUc -3'
miRNA:   3'- -UGGCGCG-CCCCG-----------UGCC-CGUGGg---GCGa -5'
26759 5' -68 NC_005808.1 + 9211 0.68 0.10857
Target:  5'- gGCgGCGCGGcGCacguucuGCGGcGCGCCCgGCg -3'
miRNA:   3'- -UGgCGCGCCcCG-------UGCC-CGUGGGgCGa -5'
26759 5' -68 NC_005808.1 + 11840 0.72 0.053949
Target:  5'- gGCCGCGCcgcGGuuGGCcUGGGCgaACCCCGCg -3'
miRNA:   3'- -UGGCGCG---CC--CCGuGCCCG--UGGGGCGa -5'
26759 5' -68 NC_005808.1 + 12569 0.66 0.165378
Target:  5'- gUgGUGUGGGGCACcaaGGGCGCggCCGUg -3'
miRNA:   3'- uGgCGCGCCCCGUG---CCCGUGg-GGCGa -5'
26759 5' -68 NC_005808.1 + 13014 0.69 0.087917
Target:  5'- aACCGCGCGccuGGGCGCGGccgaccugacGCgauACCCCGa- -3'
miRNA:   3'- -UGGCGCGC---CCCGUGCC----------CG---UGGGGCga -5'
26759 5' -68 NC_005808.1 + 13219 0.69 0.095279
Target:  5'- uACCGCGCcgaguccgaGGGCugGGGCAaggccaCCgGCg -3'
miRNA:   3'- -UGGCGCGc--------CCCGugCCCGUg-----GGgCGa -5'
26759 5' -68 NC_005808.1 + 14763 0.67 0.124237
Target:  5'- aGCgGCGCGGccGGCgccaccGCGGGCAgCgCGCg -3'
miRNA:   3'- -UGgCGCGCC--CCG------UGCCCGUgGgGCGa -5'
26759 5' -68 NC_005808.1 + 15174 0.68 0.114783
Target:  5'- gGCCGC-C-GGGCGCGGuGCGCCaggCGCg -3'
miRNA:   3'- -UGGCGcGcCCCGUGCC-CGUGGg--GCGa -5'
26759 5' -68 NC_005808.1 + 15858 0.68 0.114783
Target:  5'- aAUCGCaGCGGGcGCGCuGGCggugGCCCgGCUu -3'
miRNA:   3'- -UGGCG-CGCCC-CGUGcCCG----UGGGgCGA- -5'
26759 5' -68 NC_005808.1 + 18062 0.66 0.161182
Target:  5'- uACCgGCGCGGGGUGCGuGCuggGCCgCCGa- -3'
miRNA:   3'- -UGG-CGCGCCCCGUGCcCG---UGG-GGCga -5'
26759 5' -68 NC_005808.1 + 18168 0.69 0.095279
Target:  5'- gGCCGCGCGcGGCAccgacaaauCGGGCcgGCUgCGCUu -3'
miRNA:   3'- -UGGCGCGCcCCGU---------GCCCG--UGGgGCGA- -5'
26759 5' -68 NC_005808.1 + 18498 0.66 0.141611
Target:  5'- cGCgCGCauguaGCGGGGUGCccGUGCCCCGCg -3'
miRNA:   3'- -UG-GCG-----CGCCCCGUGccCGUGGGGCGa -5'
26759 5' -68 NC_005808.1 + 20086 0.67 0.130936
Target:  5'- uGCuCGCuGCGGGGaugaugGCGGGCAUgaccagcccagCCCGCc -3'
miRNA:   3'- -UG-GCG-CGCCCCg-----UGCCCGUG-----------GGGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.