miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26759 5' -68 NC_005808.1 + 27833 0.68 0.103221
Target:  5'- uGCC-CGCGGuGGCGCcGGcCGCgCCGCUg -3'
miRNA:   3'- -UGGcGCGCC-CCGUGcCC-GUGgGGCGA- -5'
26759 5' -68 NC_005808.1 + 15858 0.68 0.114783
Target:  5'- aAUCGCaGCGGGcGCGCuGGCggugGCCCgGCUu -3'
miRNA:   3'- -UGGCG-CGCCC-CGUGcCCG----UGGGgCGA- -5'
26759 5' -68 NC_005808.1 + 9211 0.68 0.10857
Target:  5'- gGCgGCGCGGcGCacguucuGCGGcGCGCCCgGCg -3'
miRNA:   3'- -UGgCGCGCCcCG-------UGCC-CGUGGGgCGa -5'
26759 5' -68 NC_005808.1 + 8997 0.69 0.095279
Target:  5'- cGCCGCGCgGGGGCgcuuccagcagGCGGcGCACCaguuCGUc -3'
miRNA:   3'- -UGGCGCG-CCCCG-----------UGCC-CGUGGg---GCGa -5'
26759 5' -68 NC_005808.1 + 36981 0.69 0.092762
Target:  5'- cGCCGCGCcacGCGCGaaacGCACCCCGCc -3'
miRNA:   3'- -UGGCGCGcccCGUGCc---CGUGGGGCGa -5'
26759 5' -68 NC_005808.1 + 20703 0.69 0.090309
Target:  5'- gGCUGgaCGaCGaGGCACGGGCACCCCa-- -3'
miRNA:   3'- -UGGC--GC-GCcCCGUGCCCGUGGGGcga -5'
26759 5' -68 NC_005808.1 + 18168 0.69 0.095279
Target:  5'- gGCCGCGCGcGGCAccgacaaauCGGGCcgGCUgCGCUu -3'
miRNA:   3'- -UGGCGCGCcCCGU---------GCCCG--UGGgGCGA- -5'
26759 5' -68 NC_005808.1 + 13219 0.69 0.095279
Target:  5'- uACCGCGCcgaguccgaGGGCugGGGCAaggccaCCgGCg -3'
miRNA:   3'- -UGGCGCGc--------CCCGugCCCGUg-----GGgCGa -5'
26759 5' -68 NC_005808.1 + 32585 0.69 0.089585
Target:  5'- uACCaGgGCGGGGgC-CGGGCgcgcggcacuuucgACCCCGCc -3'
miRNA:   3'- -UGG-CgCGCCCC-GuGCCCG--------------UGGGGCGa -5'
26759 5' -68 NC_005808.1 + 13014 0.69 0.087917
Target:  5'- aACCGCGCGccuGGGCGCGGccgaccugacGCgauACCCCGa- -3'
miRNA:   3'- -UGGCGCGC---CCCGUGCC----------CG---UGGGGCga -5'
26759 5' -68 NC_005808.1 + 38876 0.7 0.072789
Target:  5'- cACCgGCGUGaacGGCACGGGCGCCacgagCGCg -3'
miRNA:   3'- -UGG-CGCGCc--CCGUGCCCGUGGg----GCGa -5'
26759 5' -68 NC_005808.1 + 5624 0.71 0.063548
Target:  5'- uUCGCGCGuGGCGCGGcGCAgCuuGCUg -3'
miRNA:   3'- uGGCGCGCcCCGUGCC-CGUgGggCGA- -5'
26759 5' -68 NC_005808.1 + 26242 0.71 0.0671
Target:  5'- -gCGCGCGucgccgaaGGCACGGGCA-CCCGCc -3'
miRNA:   3'- ugGCGCGCc-------CCGUGCCCGUgGGGCGa -5'
26759 5' -68 NC_005808.1 + 11840 0.72 0.053949
Target:  5'- gGCCGCGCcgcGGuuGGCcUGGGCgaACCCCGCg -3'
miRNA:   3'- -UGGCGCG---CC--CCGuGCCCG--UGGGGCGa -5'
26759 5' -68 NC_005808.1 + 24087 1.06 0.000073
Target:  5'- gACCGCGCGGGGCACGGGCACCCCGCUa -3'
miRNA:   3'- -UGGCGCGCCCCGUGCCCGUGGGGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.