miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2676 3' -55.2 NC_001491.2 + 107423 0.66 0.936019
Target:  5'- uCUGGCCauguaCUCGugcuGGCGUGuCAGGUCCaGCc -3'
miRNA:   3'- -GACCGG-----GAGC----UUGCAU-GUCUAGG-CGu -5'
2676 3' -55.2 NC_001491.2 + 33492 0.66 0.936019
Target:  5'- -cGGCCCUCGGGCcccgACgcaAGGcugCCGCGg -3'
miRNA:   3'- gaCCGGGAGCUUGca--UG---UCUa--GGCGU- -5'
2676 3' -55.2 NC_001491.2 + 28318 0.66 0.936019
Target:  5'- -cGGUCCUCGGA-GUuCAGugcCCGCAg -3'
miRNA:   3'- gaCCGGGAGCUUgCAuGUCua-GGCGU- -5'
2676 3' -55.2 NC_001491.2 + 111973 0.66 0.932516
Target:  5'- cCUGGgaaaagaCCCgcaaugaccgaaggCGAGucCGUGCGGGUCCGCGc -3'
miRNA:   3'- -GACC-------GGGa-------------GCUU--GCAUGUCUAGGCGU- -5'
2676 3' -55.2 NC_001491.2 + 26706 0.67 0.902163
Target:  5'- -cGGCCg-CGGGCGcGCAGGUacgCCGCGg -3'
miRNA:   3'- gaCCGGgaGCUUGCaUGUCUA---GGCGU- -5'
2676 3' -55.2 NC_001491.2 + 33448 0.67 0.872681
Target:  5'- -gGcGCCCUCGGuccgcguccgcgaaGCGUACacccGGGUCUGCGc -3'
miRNA:   3'- gaC-CGGGAGCU--------------UGCAUG----UCUAGGCGU- -5'
2676 3' -55.2 NC_001491.2 + 28579 0.68 0.844083
Target:  5'- cCUGGCCCcCGGGCcagGUACGGGcgcagggcCCGCGg -3'
miRNA:   3'- -GACCGGGaGCUUG---CAUGUCUa-------GGCGU- -5'
2676 3' -55.2 NC_001491.2 + 23177 0.69 0.810189
Target:  5'- gUGGaugauCCUCuguGCGUGCAGGUaCCGCAg -3'
miRNA:   3'- gACCg----GGAGcu-UGCAUGUCUA-GGCGU- -5'
2676 3' -55.2 NC_001491.2 + 5759 0.7 0.764221
Target:  5'- -gGGCgCUCGGACG-ACGGGcgCCGCu -3'
miRNA:   3'- gaCCGgGAGCUUGCaUGUCUa-GGCGu -5'
2676 3' -55.2 NC_001491.2 + 81473 0.71 0.692114
Target:  5'- -cGGCCCUCGAagaugccgcGCGUGCAGcggagagcgccgacgCCGCc -3'
miRNA:   3'- gaCCGGGAGCU---------UGCAUGUCua-------------GGCGu -5'
2676 3' -55.2 NC_001491.2 + 53018 0.73 0.613176
Target:  5'- --uGCCCUgGGugGUGCGGAUCUGUc -3'
miRNA:   3'- gacCGGGAgCUugCAUGUCUAGGCGu -5'
2676 3' -55.2 NC_001491.2 + 115754 0.73 0.562129
Target:  5'- cCUGGCCCgggaCGAACGUcguCGGGUUCGUu -3'
miRNA:   3'- -GACCGGGa---GCUUGCAu--GUCUAGGCGu -5'
2676 3' -55.2 NC_001491.2 + 67181 1.08 0.00373
Target:  5'- cCUGGCCCUCGAACGUACAGAUCCGCAc -3'
miRNA:   3'- -GACCGGGAGCUUGCAUGUCUAGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.