miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2676 5' -56.2 NC_001491.2 + 29013 0.66 0.93442
Target:  5'- aCCACCGACCACcgacCACCGAccaccGAC-Ca -3'
miRNA:   3'- gGGUGGCUGGUGca--GUGGUU-----CUGcGc -5'
2676 5' -56.2 NC_001491.2 + 28978 0.66 0.93442
Target:  5'- aCCACCGACCACcgacCACCGAccaccGAC-Ca -3'
miRNA:   3'- gGGUGGCUGGUGca--GUGGUU-----CUGcGc -5'
2676 5' -56.2 NC_001491.2 + 75617 0.66 0.929429
Target:  5'- -aCGCUGguacuauacGCCGCGUCuaugguaauACCGGGAUGCGc -3'
miRNA:   3'- ggGUGGC---------UGGUGCAG---------UGGUUCUGCGC- -5'
2676 5' -56.2 NC_001491.2 + 25027 0.66 0.924209
Target:  5'- gCCGCC-ACCGCcggCACCGAGgucuuccgcuGCGCGc -3'
miRNA:   3'- gGGUGGcUGGUGca-GUGGUUC----------UGCGC- -5'
2676 5' -56.2 NC_001491.2 + 89217 0.66 0.924209
Target:  5'- aCUCACCG-CCGCGcaaaacccgCGCCu-GGCGCa -3'
miRNA:   3'- -GGGUGGCuGGUGCa--------GUGGuuCUGCGc -5'
2676 5' -56.2 NC_001491.2 + 81512 0.66 0.924209
Target:  5'- -aCGCCG-CCACGcC-CCAGGuaaACGCGa -3'
miRNA:   3'- ggGUGGCuGGUGCaGuGGUUC---UGCGC- -5'
2676 5' -56.2 NC_001491.2 + 112204 0.66 0.924209
Target:  5'- -aCACCcACgGCGUCGCCAAGgucauACGgGg -3'
miRNA:   3'- ggGUGGcUGgUGCAGUGGUUC-----UGCgC- -5'
2676 5' -56.2 NC_001491.2 + 88676 0.66 0.923674
Target:  5'- gCCGCCGACagaACGgcaACCAGaggacauGACGCc -3'
miRNA:   3'- gGGUGGCUGg--UGCag-UGGUU-------CUGCGc -5'
2676 5' -56.2 NC_001491.2 + 2442 0.66 0.918758
Target:  5'- gCCGCUGGCCGCcagcUCcCCGAaGCGCGc -3'
miRNA:   3'- gGGUGGCUGGUGc---AGuGGUUcUGCGC- -5'
2676 5' -56.2 NC_001491.2 + 94583 0.66 0.918758
Target:  5'- aCUaACCGugCcCGUCugCAgAGACGCu -3'
miRNA:   3'- gGG-UGGCugGuGCAGugGU-UCUGCGc -5'
2676 5' -56.2 NC_001491.2 + 12605 0.66 0.918758
Target:  5'- gCCGCCG-CCGCGgCAgcggccgccCCGGGGCGgGa -3'
miRNA:   3'- gGGUGGCuGGUGCaGU---------GGUUCUGCgC- -5'
2676 5' -56.2 NC_001491.2 + 50016 0.66 0.918758
Target:  5'- cCCCuccuucaCGACCACGUCggucACUGacaugagaguAGACGCGu -3'
miRNA:   3'- -GGGug-----GCUGGUGCAG----UGGU----------UCUGCGC- -5'
2676 5' -56.2 NC_001491.2 + 25146 0.66 0.913079
Target:  5'- cUCCAgCGGCgAgGaggCGCCGAGAgGCGa -3'
miRNA:   3'- -GGGUgGCUGgUgCa--GUGGUUCUgCGC- -5'
2676 5' -56.2 NC_001491.2 + 69139 0.66 0.913079
Target:  5'- gCCCACCcccaaguCCACGUUAgCAcGugGCu -3'
miRNA:   3'- -GGGUGGcu-----GGUGCAGUgGUuCugCGc -5'
2676 5' -56.2 NC_001491.2 + 33914 0.66 0.913079
Target:  5'- gCCCGggccUCGGCCuggACGUCACCcAGGcCGUGu -3'
miRNA:   3'- -GGGU----GGCUGG---UGCAGUGGuUCU-GCGC- -5'
2676 5' -56.2 NC_001491.2 + 52405 0.66 0.913079
Target:  5'- --aAUCuGCCAUGUCGCCGcGACGCu -3'
miRNA:   3'- gggUGGcUGGUGCAGUGGUuCUGCGc -5'
2676 5' -56.2 NC_001491.2 + 68991 0.66 0.913079
Target:  5'- uCCCGgugUUGACCACG-CGCCGcaGGuACGCa -3'
miRNA:   3'- -GGGU---GGCUGGUGCaGUGGU--UC-UGCGc -5'
2676 5' -56.2 NC_001491.2 + 97443 0.66 0.913079
Target:  5'- -aUAgCGGCUAcCGUUACCAcgauaGGACGCGa -3'
miRNA:   3'- ggGUgGCUGGU-GCAGUGGU-----UCUGCGC- -5'
2676 5' -56.2 NC_001491.2 + 3390 0.66 0.913079
Target:  5'- aCCACCaGaACgGCGcgCACCGcgAGGCGCa -3'
miRNA:   3'- gGGUGG-C-UGgUGCa-GUGGU--UCUGCGc -5'
2676 5' -56.2 NC_001491.2 + 117598 0.66 0.909561
Target:  5'- aCCACCucgauGCCAuuggauCGUCACCAucaagcaccccacccGGGCGCa -3'
miRNA:   3'- gGGUGGc----UGGU------GCAGUGGU---------------UCUGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.