miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2676 5' -56.2 NC_001491.2 + 50016 0.66 0.918758
Target:  5'- cCCCuccuucaCGACCACGUCggucACUGacaugagaguAGACGCGu -3'
miRNA:   3'- -GGGug-----GCUGGUGCAG----UGGU----------UCUGCGC- -5'
2676 5' -56.2 NC_001491.2 + 98961 0.67 0.867078
Target:  5'- -aCGCCGGCCugGUC-CCccuGGGCGg- -3'
miRNA:   3'- ggGUGGCUGGugCAGuGGu--UCUGCgc -5'
2676 5' -56.2 NC_001491.2 + 145070 0.67 0.867078
Target:  5'- uCCCACgCGGCCgaggcugcGCGgucUCugCGcGACGCGg -3'
miRNA:   3'- -GGGUG-GCUGG--------UGC---AGugGUuCUGCGC- -5'
2676 5' -56.2 NC_001491.2 + 147844 0.67 0.867078
Target:  5'- cCCCACUGGCCGCugUACC--GAUGCa -3'
miRNA:   3'- -GGGUGGCUGGUGcaGUGGuuCUGCGc -5'
2676 5' -56.2 NC_001491.2 + 34296 0.67 0.874295
Target:  5'- cUCC-CCGGcCCACcUCAgCCAGGAgGCGa -3'
miRNA:   3'- -GGGuGGCU-GGUGcAGU-GGUUCUgCGC- -5'
2676 5' -56.2 NC_001491.2 + 95140 0.67 0.877124
Target:  5'- cCCCGCCGACCagcgacgcgguguacACGUgggCACCuuGGAgCGCc -3'
miRNA:   3'- -GGGUGGCUGG---------------UGCA---GUGGu-UCU-GCGc -5'
2676 5' -56.2 NC_001491.2 + 37105 0.67 0.8881
Target:  5'- aCUACCGcCUACGUCACUAccGGACu-- -3'
miRNA:   3'- gGGUGGCuGGUGCAGUGGU--UCUGcgc -5'
2676 5' -56.2 NC_001491.2 + 34102 0.67 0.894031
Target:  5'- cCCCugUGGCCcacCGUCcCCGGGAagcagucCGCGa -3'
miRNA:   3'- -GGGugGCUGGu--GCAGuGGUUCU-------GCGC- -5'
2676 5' -56.2 NC_001491.2 + 3471 0.67 0.901037
Target:  5'- gCCCGCuCGACCAgGUCcCUGAGuuCGUa -3'
miRNA:   3'- -GGGUG-GCUGGUgCAGuGGUUCu-GCGc -5'
2676 5' -56.2 NC_001491.2 + 33688 0.67 0.901037
Target:  5'- uCCCGCCuGCC-C-UC-CCGAGGCGCu -3'
miRNA:   3'- -GGGUGGcUGGuGcAGuGGUUCUGCGc -5'
2676 5' -56.2 NC_001491.2 + 1804 0.68 0.825574
Target:  5'- gUCCACCGuguagGCCACGUUggaggagcggcacaGCCucagGGGCGCa -3'
miRNA:   3'- -GGGUGGC-----UGGUGCAG--------------UGGu---UCUGCGc -5'
2676 5' -56.2 NC_001491.2 + 1579 0.68 0.82806
Target:  5'- gCCgCGCCGGCCGCaGgcgaggUACaCGGGGCGCa -3'
miRNA:   3'- -GG-GUGGCUGGUG-Ca-----GUG-GUUCUGCGc -5'
2676 5' -56.2 NC_001491.2 + 26701 0.68 0.836234
Target:  5'- gCUugCGGCCGCGggCGCgCAGGuACGCc -3'
miRNA:   3'- gGGugGCUGGUGCa-GUG-GUUC-UGCGc -5'
2676 5' -56.2 NC_001491.2 + 52667 0.68 0.836234
Target:  5'- gCCACCG-CCu--UCACCcgcAGACGCGg -3'
miRNA:   3'- gGGUGGCuGGugcAGUGGu--UCUGCGC- -5'
2676 5' -56.2 NC_001491.2 + 75149 0.68 0.836234
Target:  5'- aCCCACCGAUCcCGUCAac--GGCaGCGg -3'
miRNA:   3'- -GGGUGGCUGGuGCAGUgguuCUG-CGC- -5'
2676 5' -56.2 NC_001491.2 + 29069 0.68 0.84185
Target:  5'- aCCACCGACCACcgacCACCAccgaucucaugggcAGAcccacuCGCGa -3'
miRNA:   3'- gGGUGGCUGGUGca--GUGGU--------------UCU------GCGC- -5'
2676 5' -56.2 NC_001491.2 + 32954 0.68 0.844229
Target:  5'- gCCGCC--UCGCGcuaCGCCGAGGCGCa -3'
miRNA:   3'- gGGUGGcuGGUGCa--GUGGUUCUGCGc -5'
2676 5' -56.2 NC_001491.2 + 42048 0.68 0.844229
Target:  5'- gCCugUGAUCACGagACCGAGGCa-- -3'
miRNA:   3'- gGGugGCUGGUGCagUGGUUCUGcgc -5'
2676 5' -56.2 NC_001491.2 + 32514 0.68 0.859658
Target:  5'- gUCCGCgaGGCCAaucUgGCCAAGACGCu -3'
miRNA:   3'- -GGGUGg-CUGGUgc-AgUGGUUCUGCGc -5'
2676 5' -56.2 NC_001491.2 + 42496 0.68 0.859658
Target:  5'- gCCAggauCCGuACCACG-CGCCGggccAGGCGCa -3'
miRNA:   3'- gGGU----GGC-UGGUGCaGUGGU----UCUGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.