miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2676 5' -56.2 NC_001491.2 + 67217 1.11 0.002658
Target:  5'- uCCCACCGACCACGUCACCAAGACGCGa -3'
miRNA:   3'- -GGGUGGCUGGUGCAGUGGUUCUGCGC- -5'
2676 5' -56.2 NC_001491.2 + 53978 0.74 0.549749
Target:  5'- uCUCAUCGugCGCaaCACCGGGGCGCa -3'
miRNA:   3'- -GGGUGGCugGUGcaGUGGUUCUGCGc -5'
2676 5' -56.2 NC_001491.2 + 84918 0.73 0.579379
Target:  5'- gUCCACCGGCCugGaguuugggCGCgAuGACGCGg -3'
miRNA:   3'- -GGGUGGCUGGugCa-------GUGgUuCUGCGC- -5'
2676 5' -56.2 NC_001491.2 + 103421 0.72 0.649469
Target:  5'- aCCGCCGACUuagcaauuCGUCAgCAGGAaccaCGCGa -3'
miRNA:   3'- gGGUGGCUGGu-------GCAGUgGUUCU----GCGC- -5'
2676 5' -56.2 NC_001491.2 + 2611 0.72 0.649469
Target:  5'- gCCgCGCaaGCCGCGUCGCUggGcCGCGg -3'
miRNA:   3'- -GG-GUGgcUGGUGCAGUGGuuCuGCGC- -5'
2676 5' -56.2 NC_001491.2 + 3890 0.72 0.606329
Target:  5'- cCCCGCCucgucucucggguaGGCCAUGUcCGCguAGGCGCGc -3'
miRNA:   3'- -GGGUGG--------------CUGGUGCA-GUGguUCUGCGC- -5'
2676 5' -56.2 NC_001491.2 + 52622 0.71 0.709107
Target:  5'- cUCCACCGACacauuUACGaUCGCCGcccgcggagAGACGUGg -3'
miRNA:   3'- -GGGUGGCUG-----GUGC-AGUGGU---------UCUGCGC- -5'
2676 5' -56.2 NC_001491.2 + 53150 0.71 0.706164
Target:  5'- aCCugUGGCCACG-CGCUAGGggcuaggucugccaGCGCGg -3'
miRNA:   3'- gGGugGCUGGUGCaGUGGUUC--------------UGCGC- -5'
2676 5' -56.2 NC_001491.2 + 100727 0.7 0.737233
Target:  5'- aCCgagGCCGGCCAuggcCGUUGCCGccggggccgucccGGACGCGg -3'
miRNA:   3'- gGG---UGGCUGGU----GCAGUGGU-------------UCUGCGC- -5'
2676 5' -56.2 NC_001491.2 + 99880 0.7 0.738191
Target:  5'- uCCCGCCGccacccacGCCGCaGUCGCCGGcGA-GCGg -3'
miRNA:   3'- -GGGUGGC--------UGGUG-CAGUGGUU-CUgCGC- -5'
2676 5' -56.2 NC_001491.2 + 131604 0.7 0.742014
Target:  5'- aCCCACCGcACCGCGaucgacaaccucugCGCCGcuGGAcuCGCGg -3'
miRNA:   3'- -GGGUGGC-UGGUGCa-------------GUGGU--UCU--GCGC- -5'
2676 5' -56.2 NC_001491.2 + 31987 0.7 0.757151
Target:  5'- gUCGCCgGGCCACGggcuccucaUCACCcggcggugGGGACGCGg -3'
miRNA:   3'- gGGUGG-CUGGUGC---------AGUGG--------UUCUGCGC- -5'
2676 5' -56.2 NC_001491.2 + 27178 0.7 0.738191
Target:  5'- cCCCACgGAgCGCGgCAgCGAGACcGCGu -3'
miRNA:   3'- -GGGUGgCUgGUGCaGUgGUUCUG-CGC- -5'
2676 5' -56.2 NC_001491.2 + 24700 0.7 0.738191
Target:  5'- gCCCGCuCGGuCCACGgccgcCGCCGcGACGCc -3'
miRNA:   3'- -GGGUG-GCU-GGUGCa----GUGGUuCUGCGc -5'
2676 5' -56.2 NC_001491.2 + 95919 0.7 0.728573
Target:  5'- cCCCGuuGAgcgaCACGUCACCucaagcGACGUGg -3'
miRNA:   3'- -GGGUggCUg---GUGCAGUGGuu----CUGCGC- -5'
2676 5' -56.2 NC_001491.2 + 62972 0.69 0.819715
Target:  5'- aCCACCagacGCCAgGa-GCCAGGACGCa -3'
miRNA:   3'- gGGUGGc---UGGUgCagUGGUUCUGCGc -5'
2676 5' -56.2 NC_001491.2 + 89744 0.69 0.784771
Target:  5'- uUCCAUCGAUCACGUCcagACCGAG-CaGCu -3'
miRNA:   3'- -GGGUGGCUGGUGCAG---UGGUUCuG-CGc -5'
2676 5' -56.2 NC_001491.2 + 26807 0.69 0.810346
Target:  5'- gUCCGCCGGCgGCGUCuccccgaucccgaGCCGGGucucgaaaaaccGCGCa -3'
miRNA:   3'- -GGGUGGCUGgUGCAG-------------UGGUUC------------UGCGc -5'
2676 5' -56.2 NC_001491.2 + 12115 0.69 0.77477
Target:  5'- cCCCcCCGGCCGCGgcugCggcgaagguggggGCCAAGACGa- -3'
miRNA:   3'- -GGGuGGCUGGUGCa---G-------------UGGUUCUGCgc -5'
2676 5' -56.2 NC_001491.2 + 90110 0.69 0.784771
Target:  5'- uUCCGCCG-CCGCG-CGCCGcucGGAgGCu -3'
miRNA:   3'- -GGGUGGCuGGUGCaGUGGU---UCUgCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.