Results 1 - 20 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
2676 | 5' | -56.2 | NC_001491.2 | + | 67217 | 1.11 | 0.002658 |
Target: 5'- uCCCACCGACCACGUCACCAAGACGCGa -3' miRNA: 3'- -GGGUGGCUGGUGCAGUGGUUCUGCGC- -5' |
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2676 | 5' | -56.2 | NC_001491.2 | + | 53978 | 0.74 | 0.549749 |
Target: 5'- uCUCAUCGugCGCaaCACCGGGGCGCa -3' miRNA: 3'- -GGGUGGCugGUGcaGUGGUUCUGCGc -5' |
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2676 | 5' | -56.2 | NC_001491.2 | + | 84918 | 0.73 | 0.579379 |
Target: 5'- gUCCACCGGCCugGaguuugggCGCgAuGACGCGg -3' miRNA: 3'- -GGGUGGCUGGugCa-------GUGgUuCUGCGC- -5' |
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2676 | 5' | -56.2 | NC_001491.2 | + | 3890 | 0.72 | 0.606329 |
Target: 5'- cCCCGCCucgucucucggguaGGCCAUGUcCGCguAGGCGCGc -3' miRNA: 3'- -GGGUGG--------------CUGGUGCA-GUGguUCUGCGC- -5' |
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2676 | 5' | -56.2 | NC_001491.2 | + | 2611 | 0.72 | 0.649469 |
Target: 5'- gCCgCGCaaGCCGCGUCGCUggGcCGCGg -3' miRNA: 3'- -GG-GUGgcUGGUGCAGUGGuuCuGCGC- -5' |
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2676 | 5' | -56.2 | NC_001491.2 | + | 103421 | 0.72 | 0.649469 |
Target: 5'- aCCGCCGACUuagcaauuCGUCAgCAGGAaccaCGCGa -3' miRNA: 3'- gGGUGGCUGGu-------GCAGUgGUUCU----GCGC- -5' |
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2676 | 5' | -56.2 | NC_001491.2 | + | 53150 | 0.71 | 0.706164 |
Target: 5'- aCCugUGGCCACG-CGCUAGGggcuaggucugccaGCGCGg -3' miRNA: 3'- gGGugGCUGGUGCaGUGGUUC--------------UGCGC- -5' |
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2676 | 5' | -56.2 | NC_001491.2 | + | 52622 | 0.71 | 0.709107 |
Target: 5'- cUCCACCGACacauuUACGaUCGCCGcccgcggagAGACGUGg -3' miRNA: 3'- -GGGUGGCUG-----GUGC-AGUGGU---------UCUGCGC- -5' |
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2676 | 5' | -56.2 | NC_001491.2 | + | 95919 | 0.7 | 0.728573 |
Target: 5'- cCCCGuuGAgcgaCACGUCACCucaagcGACGUGg -3' miRNA: 3'- -GGGUggCUg---GUGCAGUGGuu----CUGCGC- -5' |
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2676 | 5' | -56.2 | NC_001491.2 | + | 100727 | 0.7 | 0.737233 |
Target: 5'- aCCgagGCCGGCCAuggcCGUUGCCGccggggccgucccGGACGCGg -3' miRNA: 3'- gGG---UGGCUGGU----GCAGUGGU-------------UCUGCGC- -5' |
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2676 | 5' | -56.2 | NC_001491.2 | + | 24700 | 0.7 | 0.738191 |
Target: 5'- gCCCGCuCGGuCCACGgccgcCGCCGcGACGCc -3' miRNA: 3'- -GGGUG-GCU-GGUGCa----GUGGUuCUGCGc -5' |
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2676 | 5' | -56.2 | NC_001491.2 | + | 27178 | 0.7 | 0.738191 |
Target: 5'- cCCCACgGAgCGCGgCAgCGAGACcGCGu -3' miRNA: 3'- -GGGUGgCUgGUGCaGUgGUUCUG-CGC- -5' |
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2676 | 5' | -56.2 | NC_001491.2 | + | 99880 | 0.7 | 0.738191 |
Target: 5'- uCCCGCCGccacccacGCCGCaGUCGCCGGcGA-GCGg -3' miRNA: 3'- -GGGUGGC--------UGGUG-CAGUGGUU-CUgCGC- -5' |
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2676 | 5' | -56.2 | NC_001491.2 | + | 131604 | 0.7 | 0.742014 |
Target: 5'- aCCCACCGcACCGCGaucgacaaccucugCGCCGcuGGAcuCGCGg -3' miRNA: 3'- -GGGUGGC-UGGUGCa-------------GUGGU--UCU--GCGC- -5' |
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2676 | 5' | -56.2 | NC_001491.2 | + | 31987 | 0.7 | 0.757151 |
Target: 5'- gUCGCCgGGCCACGggcuccucaUCACCcggcggugGGGACGCGg -3' miRNA: 3'- gGGUGG-CUGGUGC---------AGUGG--------UUCUGCGC- -5' |
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2676 | 5' | -56.2 | NC_001491.2 | + | 12115 | 0.69 | 0.77477 |
Target: 5'- cCCCcCCGGCCGCGgcugCggcgaagguggggGCCAAGACGa- -3' miRNA: 3'- -GGGuGGCUGGUGCa---G-------------UGGUUCUGCgc -5' |
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2676 | 5' | -56.2 | NC_001491.2 | + | 8751 | 0.69 | 0.775685 |
Target: 5'- aUCCACCuccucGAuCCACGUgACCGAGGacuCGCGc -3' miRNA: 3'- -GGGUGG-----CU-GGUGCAgUGGUUCU---GCGC- -5' |
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2676 | 5' | -56.2 | NC_001491.2 | + | 89744 | 0.69 | 0.784771 |
Target: 5'- uUCCAUCGAUCACGUCcagACCGAG-CaGCu -3' miRNA: 3'- -GGGUGGCUGGUGCAG---UGGUUCuG-CGc -5' |
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2676 | 5' | -56.2 | NC_001491.2 | + | 90110 | 0.69 | 0.784771 |
Target: 5'- uUCCGCCG-CCGCG-CGCCGcucGGAgGCu -3' miRNA: 3'- -GGGUGGCuGGUGCaGUGGU---UCUgCGc -5' |
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2676 | 5' | -56.2 | NC_001491.2 | + | 26807 | 0.69 | 0.810346 |
Target: 5'- gUCCGCCGGCgGCGUCuccccgaucccgaGCCGGGucucgaaaaaccGCGCa -3' miRNA: 3'- -GGGUGGCUGgUGCAG-------------UGGUUC------------UGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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