miRNA display CGI


Results 21 - 40 of 63 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2676 5' -56.2 NC_001491.2 + 31987 0.7 0.757151
Target:  5'- gUCGCCgGGCCACGggcuccucaUCACCcggcggugGGGACGCGg -3'
miRNA:   3'- gGGUGG-CUGGUGC---------AGUGG--------UUCUGCGC- -5'
2676 5' -56.2 NC_001491.2 + 32514 0.68 0.859658
Target:  5'- gUCCGCgaGGCCAaucUgGCCAAGACGCu -3'
miRNA:   3'- -GGGUGg-CUGGUgc-AgUGGUUCUGCGc -5'
2676 5' -56.2 NC_001491.2 + 32954 0.68 0.844229
Target:  5'- gCCGCC--UCGCGcuaCGCCGAGGCGCa -3'
miRNA:   3'- gGGUGGcuGGUGCa--GUGGUUCUGCGc -5'
2676 5' -56.2 NC_001491.2 + 33688 0.67 0.901037
Target:  5'- uCCCGCCuGCC-C-UC-CCGAGGCGCu -3'
miRNA:   3'- -GGGUGGcUGGuGcAGuGGUUCUGCGc -5'
2676 5' -56.2 NC_001491.2 + 33914 0.66 0.913079
Target:  5'- gCCCGggccUCGGCCuggACGUCACCcAGGcCGUGu -3'
miRNA:   3'- -GGGU----GGCUGG---UGCAGUGGuUCU-GCGC- -5'
2676 5' -56.2 NC_001491.2 + 34102 0.67 0.894031
Target:  5'- cCCCugUGGCCcacCGUCcCCGGGAagcagucCGCGa -3'
miRNA:   3'- -GGGugGCUGGu--GCAGuGGUUCU-------GCGC- -5'
2676 5' -56.2 NC_001491.2 + 34296 0.67 0.874295
Target:  5'- cUCC-CCGGcCCACcUCAgCCAGGAgGCGa -3'
miRNA:   3'- -GGGuGGCU-GGUGcAGU-GGUUCUgCGC- -5'
2676 5' -56.2 NC_001491.2 + 37105 0.67 0.8881
Target:  5'- aCUACCGcCUACGUCACUAccGGACu-- -3'
miRNA:   3'- gGGUGGCuGGUGCAGUGGU--UCUGcgc -5'
2676 5' -56.2 NC_001491.2 + 42048 0.68 0.844229
Target:  5'- gCCugUGAUCACGagACCGAGGCa-- -3'
miRNA:   3'- gGGugGCUGGUGCagUGGUUCUGcgc -5'
2676 5' -56.2 NC_001491.2 + 42496 0.68 0.859658
Target:  5'- gCCAggauCCGuACCACG-CGCCGggccAGGCGCa -3'
miRNA:   3'- gGGU----GGC-UGGUGCaGUGGU----UCUGCGc -5'
2676 5' -56.2 NC_001491.2 + 50016 0.66 0.918758
Target:  5'- cCCCuccuucaCGACCACGUCggucACUGacaugagaguAGACGCGu -3'
miRNA:   3'- -GGGug-----GCUGGUGCAG----UGGU----------UCUGCGC- -5'
2676 5' -56.2 NC_001491.2 + 52405 0.66 0.913079
Target:  5'- --aAUCuGCCAUGUCGCCGcGACGCu -3'
miRNA:   3'- gggUGGcUGGUGCAGUGGUuCUGCGc -5'
2676 5' -56.2 NC_001491.2 + 52622 0.71 0.709107
Target:  5'- cUCCACCGACacauuUACGaUCGCCGcccgcggagAGACGUGg -3'
miRNA:   3'- -GGGUGGCUG-----GUGC-AGUGGU---------UCUGCGC- -5'
2676 5' -56.2 NC_001491.2 + 52667 0.68 0.836234
Target:  5'- gCCACCG-CCu--UCACCcgcAGACGCGg -3'
miRNA:   3'- gGGUGGCuGGugcAGUGGu--UCUGCGC- -5'
2676 5' -56.2 NC_001491.2 + 53150 0.71 0.706164
Target:  5'- aCCugUGGCCACG-CGCUAGGggcuaggucugccaGCGCGg -3'
miRNA:   3'- gGGugGCUGGUGCaGUGGUUC--------------UGCGC- -5'
2676 5' -56.2 NC_001491.2 + 53978 0.74 0.549749
Target:  5'- uCUCAUCGugCGCaaCACCGGGGCGCa -3'
miRNA:   3'- -GGGUGGCugGUGcaGUGGUUCUGCGc -5'
2676 5' -56.2 NC_001491.2 + 58202 0.69 0.811206
Target:  5'- gCCACaGGCauaaGCGUCucCCGGGACGCu -3'
miRNA:   3'- gGGUGgCUGg---UGCAGu-GGUUCUGCGc -5'
2676 5' -56.2 NC_001491.2 + 62972 0.69 0.819715
Target:  5'- aCCACCagacGCCAgGa-GCCAGGACGCa -3'
miRNA:   3'- gGGUGGc---UGGUgCagUGGUUCUGCGc -5'
2676 5' -56.2 NC_001491.2 + 67217 1.11 0.002658
Target:  5'- uCCCACCGACCACGUCACCAAGACGCGa -3'
miRNA:   3'- -GGGUGGCUGGUGCAGUGGUUCUGCGC- -5'
2676 5' -56.2 NC_001491.2 + 68991 0.66 0.913079
Target:  5'- uCCCGgugUUGACCACG-CGCCGcaGGuACGCa -3'
miRNA:   3'- -GGGU---GGCUGGUGCaGUGGU--UC-UGCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.