miRNA display CGI


Results 41 - 60 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2676 5' -56.2 NC_001491.2 + 69139 0.66 0.913079
Target:  5'- gCCCACCcccaaguCCACGUUAgCAcGugGCu -3'
miRNA:   3'- -GGGUGGcu-----GGUGCAGUgGUuCugCGc -5'
2676 5' -56.2 NC_001491.2 + 75149 0.68 0.836234
Target:  5'- aCCCACCGAUCcCGUCAac--GGCaGCGg -3'
miRNA:   3'- -GGGUGGCUGGuGCAGUgguuCUG-CGC- -5'
2676 5' -56.2 NC_001491.2 + 75617 0.66 0.929429
Target:  5'- -aCGCUGguacuauacGCCGCGUCuaugguaauACCGGGAUGCGc -3'
miRNA:   3'- ggGUGGC---------UGGUGCAG---------UGGUUCUGCGC- -5'
2676 5' -56.2 NC_001491.2 + 81512 0.66 0.924209
Target:  5'- -aCGCCG-CCACGcC-CCAGGuaaACGCGa -3'
miRNA:   3'- ggGUGGCuGGUGCaGuGGUUC---UGCGC- -5'
2676 5' -56.2 NC_001491.2 + 84918 0.73 0.579379
Target:  5'- gUCCACCGGCCugGaguuugggCGCgAuGACGCGg -3'
miRNA:   3'- -GGGUGGCUGGugCa-------GUGgUuCUGCGC- -5'
2676 5' -56.2 NC_001491.2 + 88676 0.66 0.923674
Target:  5'- gCCGCCGACagaACGgcaACCAGaggacauGACGCc -3'
miRNA:   3'- gGGUGGCUGg--UGCag-UGGUU-------CUGCGc -5'
2676 5' -56.2 NC_001491.2 + 89217 0.66 0.924209
Target:  5'- aCUCACCG-CCGCGcaaaacccgCGCCu-GGCGCa -3'
miRNA:   3'- -GGGUGGCuGGUGCa--------GUGGuuCUGCGc -5'
2676 5' -56.2 NC_001491.2 + 89744 0.69 0.784771
Target:  5'- uUCCAUCGAUCACGUCcagACCGAG-CaGCu -3'
miRNA:   3'- -GGGUGGCUGGUGCAG---UGGUUCuG-CGc -5'
2676 5' -56.2 NC_001491.2 + 90110 0.69 0.784771
Target:  5'- uUCCGCCG-CCGCG-CGCCGcucGGAgGCu -3'
miRNA:   3'- -GGGUGGCuGGUGCaGUGGU---UCUgCGc -5'
2676 5' -56.2 NC_001491.2 + 91776 0.66 0.907171
Target:  5'- gUCCACgCGGCCGgGUUAgacCCGAGcCGCu -3'
miRNA:   3'- -GGGUG-GCUGGUgCAGU---GGUUCuGCGc -5'
2676 5' -56.2 NC_001491.2 + 94583 0.66 0.918758
Target:  5'- aCUaACCGugCcCGUCugCAgAGACGCu -3'
miRNA:   3'- gGG-UGGCugGuGCAGugGU-UCUGCGc -5'
2676 5' -56.2 NC_001491.2 + 95140 0.67 0.877124
Target:  5'- cCCCGCCGACCagcgacgcgguguacACGUgggCACCuuGGAgCGCc -3'
miRNA:   3'- -GGGUGGCUGG---------------UGCA---GUGGu-UCU-GCGc -5'
2676 5' -56.2 NC_001491.2 + 95919 0.7 0.728573
Target:  5'- cCCCGuuGAgcgaCACGUCACCucaagcGACGUGg -3'
miRNA:   3'- -GGGUggCUg---GUGCAGUGGuu----CUGCGC- -5'
2676 5' -56.2 NC_001491.2 + 97443 0.66 0.913079
Target:  5'- -aUAgCGGCUAcCGUUACCAcgauaGGACGCGa -3'
miRNA:   3'- ggGUgGCUGGU-GCAGUGGU-----UCUGCGC- -5'
2676 5' -56.2 NC_001491.2 + 98961 0.67 0.867078
Target:  5'- -aCGCCGGCCugGUC-CCccuGGGCGg- -3'
miRNA:   3'- ggGUGGCUGGugCAGuGGu--UCUGCgc -5'
2676 5' -56.2 NC_001491.2 + 99880 0.7 0.738191
Target:  5'- uCCCGCCGccacccacGCCGCaGUCGCCGGcGA-GCGg -3'
miRNA:   3'- -GGGUGGC--------UGGUG-CAGUGGUU-CUgCGC- -5'
2676 5' -56.2 NC_001491.2 + 100727 0.7 0.737233
Target:  5'- aCCgagGCCGGCCAuggcCGUUGCCGccggggccgucccGGACGCGg -3'
miRNA:   3'- gGG---UGGCUGGU----GCAGUGGU-------------UCUGCGC- -5'
2676 5' -56.2 NC_001491.2 + 103421 0.72 0.649469
Target:  5'- aCCGCCGACUuagcaauuCGUCAgCAGGAaccaCGCGa -3'
miRNA:   3'- gGGUGGCUGGu-------GCAGUgGUUCU----GCGC- -5'
2676 5' -56.2 NC_001491.2 + 112204 0.66 0.924209
Target:  5'- -aCACCcACgGCGUCGCCAAGgucauACGgGg -3'
miRNA:   3'- ggGUGGcUGgUGCAGUGGUUC-----UGCgC- -5'
2676 5' -56.2 NC_001491.2 + 117598 0.66 0.909561
Target:  5'- aCCACCucgauGCCAuuggauCGUCACCAucaagcaccccacccGGGCGCa -3'
miRNA:   3'- gGGUGGc----UGGU------GCAGUGGU---------------UCUGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.